Difference between revisions of "Getting started"

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== Set of walkthroughs ==
 
== Set of walkthroughs ==
The following table list a set of suggested walkthroughs for different topics in Cryo-ET data processing. The full list of walkthroughs can be accessed through [[Category:Walkthroughs | its page]].
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The following table list a set of suggested walkthroughs for different topics in Cryo-ET data processing. The full list of walkthroughs can be accessed through [[Walkthroughs | its page]].
 
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|+ Set available walkthroughs sorted by topic  
 
|+ Set available walkthroughs sorted by topic  

Revision as of 16:03, 3 December 2024

The best way to learn Dynamoon your own is to follow the materials in one of our 2 day-workshops PSI Workshop 2023


Starters guide

Concerning the task of subtomogram averaging, you can get a plunge-freeze immersion in Dynamo for from scratch, by following the starters guide. This is a short hands-on complete walkthrough through the main functionalities in Dynamo: viewing and organizing tomograms, extracting particles, aligning, averaging and classifying subtomograms, and avoiding overfitting.


Getting help

Dynamo offers several ways of getting help on specific subjects.... and of course, you can always [contact our forum in Google Groups]




Set of walkthroughs

The following table list a set of suggested walkthroughs for different topics in Cryo-ET data processing. The full list of walkthroughs can be accessed through its page.

Set available walkthroughs sorted by topic
Topic Walkthrough
General Starters guide
Advanced starters guide
Tips for management of tomographic data sets
High resolution walkthrough with HIV1
Models Dipole set models
Walkthrough on filament models
Walkthrough on vesicle models
Walkthrough on membrane models
PCA Walkthrough on PCA through the command line
STA and MRA Walkthrough basic multireference
Walkthrough on adaptive bandpass filtering
Tilt series alignment Walkthrough on manual marker clicking
Walkthrough on GUI based tilt series alignment
Walkthrough on command line based tilt series alignment
Walkthrough on localized reconstruction
Template matching Walkthrough for template matching
Walkthrough for GUI-based template matching
Walkthrough for model-aware template matching
Programmatic GUI customization for template matching
Visualization Walkthrough on placement of averages on table positions
Walkthrough on creation of 3d scenes
Walkthrough on hexagonal lattice coherence through neighborhood analysis
Others Integration with Warp and M