Difference between revisions of "Getting started"
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| style="background-color:#FFFFE5" | [[Starters guide]] | | style="background-color:#FFFFE5" | [[Starters guide]] | ||
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| − | | style="background-color:#FFFFE5" |Advanced starters guide | + | | style="background-color:#FFFFE5" | [[Advanced starters guide]] |
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| − | | style="background-color:#FFFFE5" |Tips for management of tomographic data sets | + | | style="background-color:#FFFFE5" | [[Tips for management of tomographic data sets]] |
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| − | | style="background-color:#FFFFE5" |High resolution walkthrough with HIV1 | + | | style="background-color:#FFFFE5" | [[High resolution walkthrough with HIV1]] |
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! scope="row" rowspan="4"| Models | ! scope="row" rowspan="4"| Models | ||
| − | | style="background-color:#ffffcc" | Dipole set models | + | | style="background-color:#ffffcc" | [[Dipole set models]] |
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| − | | style="background-color:#ffffcc" | Walkthrough on filament models | + | | style="background-color:#ffffcc" | [[Walkthrough on filament models]] |
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| − | | style="background-color:#ffffcc" | Walkthrough on vesicle models | + | | style="background-color:#ffffcc" | [[Walkthrough on vesicle models]] |
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| − | | style="background-color:#ffffcc" | Walkthrough on membrane models | + | | style="background-color:#ffffcc" | [[Walkthrough on membrane models]] |
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! scope="row" rowspan="1" | PCA | ! scope="row" rowspan="1" | PCA | ||
| − | | style="background-color:#FFFFE5" | Walkthrough on PCA through the command line | + | | style="background-color:#FFFFE5" | [[Walkthrough on PCA through the command line]] |
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! scope="row" rowspan="2"| STA and MRA | ! scope="row" rowspan="2"| STA and MRA | ||
| − | | style="background-color:#ffffcc" | Walkthrough basic multireference | + | | style="background-color:#ffffcc" | [[Walkthrough basic multireference]] |
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| − | | style="background-color:#ffffcc" | Walkthrough on adaptive bandpass filtering | + | | style="background-color:#ffffcc" | [[Walkthrough on adaptive bandpass filtering]] |
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! scope="row" rowspan="4"| Tilt series alignment | ! scope="row" rowspan="4"| Tilt series alignment | ||
| − | | style="background-color:#FFFFE5" | Walkthrough on manual marker clicking | + | | style="background-color:#FFFFE5" | [[Walkthrough on manual marker clicking]] |
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| − | | style="background-color:#FFFFE5" | Walkthrough on GUI based tilt series alignment | + | | style="background-color:#FFFFE5" | [[Walkthrough on GUI based tilt series alignment]] |
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| − | | style="background-color:#FFFFE5" | Walkthrough on command line based tilt series alignment | + | | style="background-color:#FFFFE5" | [[Walkthrough on command line based tilt series alignment]] |
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| − | | style="background-color:#FFFFE5" | Walkthrough on localized reconstruction | + | | style="background-color:#FFFFE5" | [[Walkthrough on localized reconstruction]] |
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! scope="row" rowspan="4"| Template matching | ! scope="row" rowspan="4"| Template matching | ||
| − | | style="background-color:#ffffcc" | Walkthrough for template matching | + | | style="background-color:#ffffcc" | [[Walkthrough for template matching]] |
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| − | | style="background-color:#ffffcc" | Walkthrough for GUI-based template matching | + | | style="background-color:#ffffcc" | [[Walkthrough for GUI-based template matching]] |
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| − | | style="background-color:#ffffcc" | Walkthrough for model-aware template matching | + | | style="background-color:#ffffcc" | [[Walkthrough for model-aware template matching]] |
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| − | | style="background-color:#ffffcc" | Programmatic GUI customization for template matching | + | | style="background-color:#ffffcc" | [[Programmatic GUI customization for template matching]] |
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! scope="row" rowspan="3"| Visualization | ! scope="row" rowspan="3"| Visualization | ||
| − | | style="background-color:#FFFFE5" | Walkthrough on placement of averages on table positions | + | | style="background-color:#FFFFE5" | [[Walkthrough on placement of averages on table positions]] |
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| − | | style="background-color:#FFFFE5" | Walkthrough on creation of 3d scenes | + | | style="background-color:#FFFFE5" | [[Walkthrough on creation of 3d scenes]] |
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| − | | style="background-color:#FFFFE5" | Walkthrough on hexagonal lattice coherence through neighborhood analysis | + | | style="background-color:#FFFFE5" | [[Walkthrough on hexagonal lattice coherence through neighborhood analysis]] |
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! scope="row" rowspan="1" | Others | ! scope="row" rowspan="1" | Others | ||
| − | | style="background-color:#ffffcc" | Integration with Warp and M | + | | style="background-color:#ffffcc" | [[Integration with Warp and M]] |
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|} | |} | ||
Revision as of 15:42, 3 December 2024
The best way to learn Dynamoon your own is to follow the materials in one of our 2 day-workshops PSI Workshop 2023
Starters guide
Concerning the task of subtomogram averaging, you can get a plunge-freeze immersion in Dynamo for from scratch, by following the starters guide. This is a short hands-on complete walkthrough through the main functionalities in Dynamo: viewing and organizing tomograms, extracting particles, aligning, averaging and classifying subtomograms, and avoiding overfitting.
Getting help
Dynamo offers several ways of getting help on specific subjects.... and of course, you can always [contact our forum in Google Groups]
