All public logs
Jump to navigation
Jump to search
Combined display of all available logs of Dynamo. You can narrow down the view by selecting a log type, the username (case-sensitive), or the affected page (also case-sensitive).
(newest | oldest) View (newer 500 | older 500) (20 | 50 | 100 | 250 | 500)- 11:20, 8 April 2024 AlmaVivas talk contribs created page Complete walkthrough on FHV virus (Göttingen 2024) (Created page with "Category:Walkthroughs This walkthrough uses a small size example based on a real tomogram to cover several tasks. == The example data set == The data is a fraction of a...")
- 11:19, 8 April 2024 AlmaVivas talk contribs created page Starters guide (Göttingen 2024) (Created page with "This tutorial shows how to manually pick particles in a tomogram, extract them, align and classify them. This tutorial is a shortened version of the original Starters_guide...")
- 11:17, 8 April 2024 AlmaVivas talk contribs created page High resolution walkthrough with HIV1 (Göttingen 2024) (Created page with "= Goal of the walktrough = This walktrough was designed to describe and discuss the steps necessary to go from the raw microscope data of a cryo-electron tomography experimen...")
- 11:16, 8 April 2024 AlmaVivas talk contribs created page Walkthrough on PCA through the command line (Göttingen 2024) (Created page with "PCA computations through the command line are governed through ''PCA workflow'' objects. We describe here how to create and handle them: = C...")
- 11:12, 8 April 2024 AlmaVivas talk contribs created page Walkthrough for template matching (Göttingen 2024) (Created page with "Category:Walkthroughs ''Dynamo'' includes a set of tools for location of particles inside tomograms. The most simple one is ''template matching''. == Template matching =...")
- 08:58, 8 April 2024 AlmaVivas talk contribs created page File:First-order-distance-clusters-three-different-vlps.png
- 08:58, 8 April 2024 AlmaVivas talk contribs uploaded File:First-order-distance-clusters-three-different-vlps.png
- 08:57, 8 April 2024 AlmaVivas talk contribs created page File:Average-overplot-hexagonal-lattice-measurements.png
- 08:57, 8 April 2024 AlmaVivas talk contribs uploaded File:Average-overplot-hexagonal-lattice-measurements.png
- 08:57, 8 April 2024 AlmaVivas talk contribs created page File:Selected-vlps.png
- 08:57, 8 April 2024 AlmaVivas talk contribs uploaded File:Selected-vlps.png
- 08:57, 8 April 2024 AlmaVivas talk contribs created page File:Tbl-positions-normals-vlps.png
- 08:57, 8 April 2024 AlmaVivas talk contribs uploaded File:Tbl-positions-normals-vlps.png
- 08:55, 8 April 2024 AlmaVivas talk contribs created page Walkthrough on hexagonal lattice coherence through neighborhood analysis (Created page with "Category:Walkthroughs ==Neighborhood analysis== Neighbourhood analysis stands at the forefront of methods used to investigate geometrical lattice parameters and offers...")
- 11:12, 27 March 2024 Raffaele Coray talk contribs created page File:Dtview GUI 3.png
- 11:12, 27 March 2024 Raffaele Coray talk contribs uploaded File:Dtview GUI 3.png
- 11:11, 27 March 2024 Raffaele Coray talk contribs created page File:Dtview GUI 1.png
- 11:11, 27 March 2024 Raffaele Coray talk contribs uploaded File:Dtview GUI 1.png
- 09:38, 27 March 2024 Raffaele Coray talk contribs created page File:Neigh fig5.png
- 09:38, 27 March 2024 Raffaele Coray talk contribs uploaded File:Neigh fig5.png
- 09:38, 27 March 2024 Raffaele Coray talk contribs uploaded File:Neigh fig4.png
- 09:38, 27 March 2024 Raffaele Coray talk contribs created page File:Neigh fig4.png
- 09:38, 27 March 2024 Raffaele Coray talk contribs created page File:Neigh fig3.png
- 09:38, 27 March 2024 Raffaele Coray talk contribs uploaded File:Neigh fig3.png
- 09:38, 27 March 2024 Raffaele Coray talk contribs created page File:Neigh fig2.png
- 09:38, 27 March 2024 Raffaele Coray talk contribs uploaded File:Neigh fig2.png
- 09:37, 27 March 2024 Raffaele Coray talk contribs created page File:Neigh fig1.png
- 09:37, 27 March 2024 Raffaele Coray talk contribs uploaded File:Neigh fig1.png
- 09:36, 27 March 2024 Raffaele Coray talk contribs created page Neighborhood analysis (Created page with "= Concept = The neighborhood analysis is a tool available in Dynamo that is meant to help describe the local spatial relationships of particles, especially after STA. As such...")
- 13:59, 5 March 2024 AlmaVivas talk contribs uploaded File:Final-sta-result-from-refined-gold-standard-sta.png
- 13:59, 5 March 2024 AlmaVivas talk contribs created page File:Final-sta-result-from-refined-gold-standard-sta.png
- 13:58, 5 March 2024 AlmaVivas talk contribs created page File:Isosurface-final-structure-density-map-chimera-sta.png
- 13:58, 5 March 2024 AlmaVivas talk contribs uploaded File:Isosurface-final-structure-density-map-chimera-sta.png
- 13:55, 5 March 2024 AlmaVivas talk contribs created page File:Adapted-mask-sta.png
- 13:55, 5 March 2024 AlmaVivas talk contribs uploaded File:Adapted-mask-sta.png
- 13:55, 5 March 2024 AlmaVivas talk contribs created page File:Refined-half-maps-alignment-configuration-sta.png
- 13:55, 5 March 2024 AlmaVivas talk contribs uploaded File:Refined-half-maps-alignment-configuration-sta.png
- 11:59, 5 March 2024 AlmaVivas talk contribs created page File:Last-average-for-coarse-half-maps-sta.png
- 11:59, 5 March 2024 AlmaVivas talk contribs uploaded File:Last-average-for-coarse-half-maps-sta.png
- 11:58, 5 March 2024 AlmaVivas talk contribs created page File:Coarse-half-maps-alignment-configuration-sta.png
- 11:58, 5 March 2024 AlmaVivas talk contribs uploaded File:Coarse-half-maps-alignment-configuration-sta.png
- 11:53, 5 March 2024 AlmaVivas talk contribs uploaded File:Synthetic-height-reference-sta.png
- 11:53, 5 March 2024 AlmaVivas talk contribs created page File:Synthetic-height-reference-sta.png
- 11:52, 5 March 2024 AlmaVivas talk contribs created page File:Gmm-population-clasification-sta.png
- 11:52, 5 March 2024 AlmaVivas talk contribs uploaded File:Gmm-population-clasification-sta.png
- 11:31, 5 March 2024 AlmaVivas talk contribs created page File:Last-average-second-per-tomogram-average-sta.png
- 11:31, 5 March 2024 AlmaVivas talk contribs uploaded File:Last-average-second-per-tomogram-average-sta.png
- 11:30, 5 March 2024 AlmaVivas talk contribs created page File:Subboxing-tbl-vs-last-ite-per-tomogram-project-tbl-sta.png
- 11:30, 5 March 2024 AlmaVivas talk contribs uploaded File:Subboxing-tbl-vs-last-ite-per-tomogram-project-tbl-sta.png
- 11:28, 5 March 2024 AlmaVivas talk contribs created page File:Second-per-tomogram-project-configuration-sta.png
- 11:28, 5 March 2024 AlmaVivas talk contribs uploaded File:Second-per-tomogram-project-configuration-sta.png
- 09:36, 5 March 2024 AlmaVivas talk contribs created page File:Final-average-from-average-of-averages-sta.png
- 09:36, 5 March 2024 AlmaVivas talk contribs uploaded File:Final-average-from-average-of-averages-sta.png
- 09:33, 5 March 2024 AlmaVivas talk contribs created page File:Last-average-first-per-tomogram-average-sta.png
- 09:33, 5 March 2024 AlmaVivas talk contribs uploaded File:Last-average-first-per-tomogram-average-sta.png
- 09:31, 5 March 2024 AlmaVivas talk contribs created page File:First-per-tomogram-and-averages-of-averages-project-configuration-sta.png
- 09:31, 5 March 2024 AlmaVivas talk contribs uploaded File:First-per-tomogram-and-averages-of-averages-project-configuration-sta.png
- 09:41, 4 March 2024 Raffaele Coray talk contribs created page File:RELION refine Running.png
- 09:41, 4 March 2024 Raffaele Coray talk contribs uploaded File:RELION refine Running.png
- 09:40, 4 March 2024 Raffaele Coray talk contribs created page File:RELION refine compute.png
- 09:40, 4 March 2024 Raffaele Coray talk contribs uploaded File:RELION refine compute.png
- 09:40, 4 March 2024 Raffaele Coray talk contribs created page File:RELION refine autosampling.png
- 09:40, 4 March 2024 Raffaele Coray talk contribs uploaded File:RELION refine autosampling.png
- 09:40, 4 March 2024 Raffaele Coray talk contribs uploaded File:RELION refine optimisation.png
- 09:40, 4 March 2024 Raffaele Coray talk contribs created page File:RELION refine optimisation.png
- 09:40, 4 March 2024 Raffaele Coray talk contribs created page File:RELION refine CTF.png
- 09:40, 4 March 2024 Raffaele Coray talk contribs uploaded File:RELION refine CTF.png
- 09:39, 4 March 2024 Raffaele Coray talk contribs created page File:RELION refine Reference.png
- 09:39, 4 March 2024 Raffaele Coray talk contribs uploaded File:RELION refine Reference.png
- 09:36, 4 March 2024 Raffaele Coray talk contribs created page File:RELION pseudo Running.png
- 09:36, 4 March 2024 Raffaele Coray talk contribs uploaded File:RELION pseudo Running.png
- 09:34, 4 March 2024 Raffaele Coray talk contribs created page File:RELION reconstruct Running.png
- 09:34, 4 March 2024 Raffaele Coray talk contribs uploaded File:RELION reconstruct Running.png
- 09:32, 4 March 2024 Raffaele Coray talk contribs created page File:RELION reconstruct IO v2.png
- 09:32, 4 March 2024 Raffaele Coray talk contribs uploaded File:RELION reconstruct IO v2.png
- 14:35, 1 March 2024 AlmaVivas talk contribs uploaded a new version of File:Sanity check centering-sta.png
- 14:33, 1 March 2024 AlmaVivas talk contribs created page File:Sanity check centering-sta.png
- 14:33, 1 March 2024 AlmaVivas talk contribs uploaded File:Sanity check centering-sta.png
- 14:33, 1 March 2024 AlmaVivas talk contribs created page File:Chimera-reference-center-gui-sta.png
- 14:33, 1 March 2024 AlmaVivas talk contribs uploaded File:Chimera-reference-center-gui-sta.png
- 14:32, 1 March 2024 AlmaVivas talk contribs created page File:Chimera-volume-tracer-sta.png
- 14:32, 1 March 2024 AlmaVivas talk contribs uploaded File:Chimera-volume-tracer-sta.png
- 14:31, 1 March 2024 AlmaVivas talk contribs created page File:Noise-configuration-chimera-sta.png
- 14:31, 1 March 2024 AlmaVivas talk contribs uploaded File:Noise-configuration-chimera-sta.png
- 14:31, 1 March 2024 AlmaVivas talk contribs uploaded File:Step-one-preprocesing-chimera-sta.png
- 14:31, 1 March 2024 AlmaVivas talk contribs created page File:Step-one-preprocesing-chimera-sta.png
- 11:26, 1 March 2024 AlmaVivas talk contribs created page File:Last-average-from-initial-reference-project-sta.png
- 11:26, 1 March 2024 AlmaVivas talk contribs uploaded File:Last-average-from-initial-reference-project-sta.png
- 11:26, 1 March 2024 AlmaVivas talk contribs created page File:Initial-reference-project-configuration-sta.png
- 11:26, 1 March 2024 AlmaVivas talk contribs uploaded File:Initial-reference-project-configuration-sta.png
- 11:23, 1 March 2024 AlmaVivas talk contribs created page File:Environment-parameters-gui-sta.png
- 11:23, 1 March 2024 AlmaVivas talk contribs uploaded File:Environment-parameters-gui-sta.png
- 11:22, 1 March 2024 AlmaVivas talk contribs created page File:Numerical-parameters-gui-sta.png
- 11:22, 1 March 2024 AlmaVivas talk contribs uploaded File:Numerical-parameters-gui-sta.png
- 11:22, 1 March 2024 AlmaVivas talk contribs uploaded File:Default-mask-project-dcp-gui-sta.png
- 11:22, 1 March 2024 AlmaVivas talk contribs created page File:Default-mask-project-dcp-gui-sta.png
- 11:20, 1 March 2024 AlmaVivas talk contribs created page File:Empty-sta-project-dcp-gui-sta.png
- 11:20, 1 March 2024 AlmaVivas talk contribs uploaded File:Empty-sta-project-dcp-gui-sta.png
- 11:17, 1 March 2024 AlmaVivas talk contribs created page File:Alignment-project-main-block-iterative-workflow-sta.png
- 11:17, 1 March 2024 AlmaVivas talk contribs uploaded File:Alignment-project-main-block-iterative-workflow-sta.png
- 14:58, 29 February 2024 AlmaVivas talk contribs created page File:Average-bin-2-from-seed-oversampling-dmmpp.png
- 14:58, 29 February 2024 AlmaVivas talk contribs uploaded File:Average-bin-2-from-seed-oversampling-dmmpp.png
- 14:58, 29 February 2024 AlmaVivas talk contribs created page File:Table-from-seed-oversampling-dmmpp.png
- 14:58, 29 February 2024 AlmaVivas talk contribs uploaded File:Table-from-seed-oversampling-dmmpp.png
- 14:54, 29 February 2024 AlmaVivas talk contribs created page File:Support-measurement-tool-for-oversampling-configuration-dmmpp.png
- 14:54, 29 February 2024 AlmaVivas talk contribs uploaded File:Support-measurement-tool-for-oversampling-configuration-dmmpp.png
- 14:50, 29 February 2024 AlmaVivas talk contribs created page File:Tomoslice-create-dipole-set-dmmpp.png
- 14:50, 29 February 2024 AlmaVivas talk contribs uploaded File:Tomoslice-create-dipole-set-dmmpp.png
- 14:49, 29 February 2024 AlmaVivas talk contribs created page File:Reminder-save-models-to-disk-dmmpp.png
- 14:49, 29 February 2024 AlmaVivas talk contribs uploaded File:Reminder-save-models-to-disk-dmmpp.png
- 14:49, 29 February 2024 AlmaVivas talk contribs uploaded a new version of File:3d-silce-along-with-active-pool-model-dmmpp.png
- 14:47, 29 February 2024 AlmaVivas talk contribs created page File:3d-silce-along-with-active-pool-model-dmmpp.png
- 14:47, 29 February 2024 AlmaVivas talk contribs uploaded File:3d-silce-along-with-active-pool-model-dmmpp.png
- 14:47, 29 February 2024 AlmaVivas talk contribs uploaded File:Dcm-gui-open-pre-binned-tomoslice-dmmpp.png
- 14:47, 29 February 2024 AlmaVivas talk contribs created page File:Dcm-gui-open-pre-binned-tomoslice-dmmpp.png
- 14:46, 29 February 2024 AlmaVivas talk contribs created page File:Dcm-gui-create-pre-binned-dmmpp.png
- 14:46, 29 February 2024 AlmaVivas talk contribs uploaded File:Dcm-gui-create-pre-binned-dmmpp.png
- 14:40, 29 February 2024 AlmaVivas talk contribs created page File:Motivation-file-naming-convention-dmmpp.png
- 14:40, 29 February 2024 AlmaVivas talk contribs uploaded File:Motivation-file-naming-convention-dmmpp.png
- 14:36, 29 February 2024 AlmaVivas talk contribs created page File:Schematic-representations-of-typical-immature-viral-morphologies-dmmpp.png
- 14:36, 29 February 2024 AlmaVivas talk contribs uploaded File:Schematic-representations-of-typical-immature-viral-morphologies-dmmpp.png
- 13:53, 28 February 2024 Raffaele Coray talk contribs uploaded a new version of File:Folder structure HIV1 v2.png
- 13:52, 28 February 2024 Raffaele Coray talk contribs created page File:Folder structure HIV1 v2.png
- 13:52, 28 February 2024 Raffaele Coray talk contribs uploaded File:Folder structure HIV1 v2.png
- 12:10, 28 February 2024 Raffaele Coray talk contribs created page File:Post process Running2.png
- 12:10, 28 February 2024 Raffaele Coray talk contribs uploaded File:Post process Running2.png
- 12:09, 28 February 2024 Raffaele Coray talk contribs created page File:Post process Sharpen2.png
- 12:09, 28 February 2024 Raffaele Coray talk contribs uploaded File:Post process Sharpen2.png
- 12:09, 28 February 2024 Raffaele Coray talk contribs created page File:Post process IO2.png
- 12:09, 28 February 2024 Raffaele Coray talk contribs uploaded File:Post process IO2.png
- 11:45, 28 February 2024 Daniel Castaño talk contribs created page Göttingen Workshop 2024 (Created page with "= Workshop = The PSI Dynamo workshop will take place from August the 16th to August the 18th in the Paul Scherrer Institute. The workshop provides hands-on training in all pr...")
- 12:43, 26 February 2024 AlmaVivas talk contribs created page File:Hello-world.png
- 12:43, 26 February 2024 AlmaVivas talk contribs uploaded File:Hello-world.png
- 18:08, 22 January 2024 AlmaVivas talk contribs created page Walkthrough on command line based tilt series alignment (Copenhagen 2024) (Created page with "This last tutorial on tilt series alignment is command line based. When woking under high data regimes, it is, perhaps, the most attractive option. = Create the workflow =...")
- 18:05, 22 January 2024 AlmaVivas talk contribs created page Walkthrough on GUI based tilt series alignment (Copenhagen 2024) (Created page with " This walkthrough guides users through a series of steps on how to use it in GUI-based mode. = Data = Here we will be using the same data as in the Walkthrough on manual...")
- 18:04, 22 January 2024 AlmaVivas talk contribs created page Walkthrough on manual marker clicking (Copenhagen 2024) (Created page with "This walkthrough describes the tools to ''manually'' locate fiducial markers for tilt series alignment using different graphical tools. '''Note''' : the reader should be awa...")
- 17:36, 22 January 2024 AlmaVivas talk contribs created page File:Fhv any computing enviroment.png
- 17:36, 22 January 2024 AlmaVivas talk contribs uploaded File:Fhv any computing enviroment.png
- 17:04, 22 January 2024 AlmaVivas talk contribs created page Walkthrough on PCA through the command line (Copenhagen 2024) (Created page with "PCA computations through the command line are governed through ''PCA workflow'' objects. We describe here how to create and handle them: = Cr...")
- 16:37, 22 January 2024 AlmaVivas talk contribs created page Complete walkthrough on FHV virus (Copenhagen 2024) (Created page with "Category:Walkthroughs This walkthrough uses a small size example based on a real tomogram to cover several tasks. == The example data set == The data is a fraction of a...")
- 15:42, 22 January 2024 AlmaVivas talk contribs created page Walkthrough for lattices on vesicles (Copenhagen 2024) (Created page with "his walkthrough shows the approach to process proteins that cover spheroidal vesicles following (approximately) a structured lattice. For demonstration, we use a highly binned...")
- 15:37, 22 January 2024 AlmaVivas talk contribs created page Getting a Structure from Multiple Tomograms of HIV Capsids (Copenhagen 2024) (Created page with "In this walkthrough you will get familiar with managing multiple tomograms through the ''Dynamo'' catalogue and developing strategies for alignment projects to reach a reasona...")
- 15:21, 22 January 2024 AlmaVivas talk contribs created page Starters guide (Copenhagen 2024) (Created page with "This tutorial shows how to manually pick particles in a tomogram, extract them, align and classify them. This tutorial is a shortened version of the original Starters_guide...")
- 13:06, 28 November 2023 Raffaele Coray talk contribs created page High resolution walkthrough with HIV1 (Created page with " = Goal of the walktrough = This walktrough was designed to describe and discuss the steps necessary to go from the raw microscope data of a cryo-electron tomography experime...")
- 17:50, 23 November 2023 Daniel Castaño talk contribs created page Copenhagen Workshop on Cryo Electron Tomography 2024 (Created page with "= Workshop = The SciLifeLab ''Dynamo'' workshop will take place from October the 24th to October the 27th in the SciLifeLab at Stockholm. The workshop provides hands-on train...")
- 14:20, 22 November 2023 Raffaele Coray talk contribs uploaded a new version of File:Folder structure HIV1.png
- 14:19, 22 November 2023 Raffaele Coray talk contribs created page File:Folder structure HIV1.png
- 14:19, 22 November 2023 Raffaele Coray talk contribs uploaded File:Folder structure HIV1.png
- 15:43, 26 October 2023 AlmaVivas talk contribs created page High Resolution workflow for HIV1 (SciLifeLab 2023) (Created page with "= Goal = This walkthrough was designed to describe and discuss the steps necessary to go from the raw microscope data of a cryo-electron tomography experiment to a high-reso...")
- 11:12, 20 October 2023 AlmaVivas talk contribs created page File:Align gui parameters tilt extensor.png
- 11:12, 20 October 2023 AlmaVivas talk contribs uploaded File:Align gui parameters tilt extensor.png
- 11:07, 20 October 2023 AlmaVivas talk contribs created page File:Align gui traces after gap filler.png
- 11:07, 20 October 2023 AlmaVivas talk contribs uploaded File:Align gui traces after gap filler.png
- 11:04, 20 October 2023 AlmaVivas talk contribs created page File:Align gui working markers restored.png
- 11:04, 20 October 2023 AlmaVivas talk contribs uploaded File:Align gui working markers restored.png
- 10:56, 20 October 2023 AlmaVivas talk contribs created page File:Align gui occupancy scheme.png
- 10:56, 20 October 2023 AlmaVivas talk contribs uploaded File:Align gui occupancy scheme.png
- 10:55, 20 October 2023 AlmaVivas talk contribs created page File:Align gui patch as putative gold bead.png
- 10:55, 20 October 2023 AlmaVivas talk contribs uploaded File:Align gui patch as putative gold bead.png
- 10:53, 20 October 2023 AlmaVivas talk contribs created page File:Align gui detected spots on video gui.png
- 10:53, 20 October 2023 AlmaVivas talk contribs uploaded File:Align gui detected spots on video gui.png
- 10:51, 20 October 2023 AlmaVivas talk contribs created page File:Align gui marker sets as point cloud.png
- 10:51, 20 October 2023 AlmaVivas talk contribs uploaded File:Align gui marker sets as point cloud.png
- 10:45, 20 October 2023 AlmaVivas talk contribs created page File:Align gui check marker clustered position.png
- 10:45, 20 October 2023 AlmaVivas talk contribs uploaded File:Align gui check marker clustered position.png
- 10:42, 20 October 2023 AlmaVivas talk contribs created page File:Align gui observation cloud.png
- 10:42, 20 October 2023 AlmaVivas talk contribs uploaded File:Align gui observation cloud.png
- 10:42, 20 October 2023 AlmaVivas talk contribs created page File:Align gui check observation cloud after selection or clustering.png
- 10:42, 20 October 2023 AlmaVivas talk contribs uploaded File:Align gui check observation cloud after selection or clustering.png
- 10:38, 20 October 2023 AlmaVivas talk contribs created page File:Align gui point representing cc peak.png
- 10:38, 20 October 2023 AlmaVivas talk contribs uploaded File:Align gui point representing cc peak.png
- 10:38, 20 October 2023 AlmaVivas talk contribs created page File:Align gui feature plotter allows checking of the feature values on the whole set.png
- 10:38, 20 October 2023 AlmaVivas talk contribs uploaded File:Align gui feature plotter allows checking of the feature values on the whole set.png
- 10:33, 20 October 2023 AlmaVivas talk contribs created page File:Align gui patch gallery for features.png
- 10:33, 20 October 2023 AlmaVivas talk contribs uploaded File:Align gui patch gallery for features.png
- 10:31, 20 October 2023 AlmaVivas talk contribs created page File:Align gui cloud unindexed cc peaks.png
- 10:31, 20 October 2023 AlmaVivas talk contribs uploaded File:Align gui cloud unindexed cc peaks.png
- 10:00, 20 October 2023 AlmaVivas talk contribs created page File:Align gui detection parameters.png
- 10:00, 20 October 2023 AlmaVivas talk contribs uploaded File:Align gui detection parameters.png
- 08:35, 20 October 2023 AlmaVivas talk contribs created page File:Fhv computing enviroment.png
- 08:35, 20 October 2023 AlmaVivas talk contribs uploaded File:Fhv computing enviroment.png
- 08:29, 20 October 2023 AlmaVivas talk contribs created page File:Fhv environment.png
- 08:29, 20 October 2023 AlmaVivas talk contribs uploaded File:Fhv environment.png
- 08:16, 20 October 2023 AlmaVivas talk contribs created page Complete walkthrough on FHV virus (SciLifeLab 2023) (Created page with "Category:Walkthroughs This walkthrough uses a small size example based on a real tomogram to cover several tasks. == The example data set == The data is a fraction of a...")
- 08:11, 20 October 2023 AlmaVivas talk contribs created page Walkthrough on command line based tilt series alignment (SciLifeLab 2023) (Created page with "This last tutorial on tilt series alignment is command line based. When woking under high data regimes, it is, perhaps, the most attractive option. = Create the workflow =...")
- 08:05, 20 October 2023 AlmaVivas talk contribs created page Walkthrough on GUI based tilt series alignment (SciLifeLab 2023) (Created page with "This walkthrough guides users through a series of steps on how to use it in GUI-based mode. = Data = Here we will be using the same data as in the Walkthrough on manual m...")
- 08:03, 20 October 2023 AlmaVivas talk contribs created page Walkthrough on manual marker clicking (SciLifeLab 2023) (Created page with "This walkthrough describes the tools to ''manually'' locate fiducial markers for tilt series alignment using different graphical tools. '''Note''' : the reader should be awa...")
- 07:56, 20 October 2023 AlmaVivas talk contribs created page Walkthrough on PCA through the command line (SciLifeLab 2023) (Created page with "PCA computations through the command line are governed through ''PCA workflow'' objects. We describe here how to create and handle them: = Cr...")
- 07:54, 20 October 2023 AlmaVivas talk contribs created page Walkthrough for template matching (SciLifeLab 2023) (Created page with "Category:Walkthroughs ''Dynamo'' includes a set of tools for location of particles inside tomograms. The most simple one is ''template matching''. == Template matching =...")
- 07:53, 20 October 2023 AlmaVivas talk contribs created page Starters guide (SciLifeLab 2023) (Created page with "This tutorial shows how to manually pick particles in a tomogram, extract them, align and classify them. This tutorial is a shortened version of the original Starters_guide...")
- 12:27, 10 September 2023 Daniel Castaño talk contribs created page Walkthrough on PCA through the command line (EMBO 2023) (Created page with "PCA computations through the command line are governed through ''PCA workflow'' objects. We describe here how to create and handle them: = Cr...")
- 16:31, 8 September 2023 AlmaVivas talk contribs created page Walkthrough for lattices on vesicles (EMBO2023) (Created page with "This walkthrough shows the approach to process proteins that cover spheroidal vesicles following (approximately) a structured lattice. For demonstration, we use a highly binne...")
- 16:21, 8 September 2023 AlmaVivas talk contribs created page Getting a Structure from Multiple Tomograms of HIV Capsids (EMBO2023) (Created page with "In this walkthrough you will get familiar with managing multiple tomograms through the ''Dynamo'' catalogue and developing strategies for alignment projects to reach a reasona...")
- 14:58, 8 September 2023 AlmaVivas talk contribs created page Advanced starters guide (EMBO2023) (Created page with "Category:Walkthroughs This walkthrough uses a small size example based on a real tomogram to cover several tasks. == The example data set == The data is a fraction of a...")
- 14:56, 8 September 2023 AlmaVivas talk contribs created page Starters guide (EMBO2023) (Created page with "This tutorial shows how to manually pick particles in a tomogram, extract them, align and classify them. This tutorial is a shortened version of the original Starters_guide...")
- 14:54, 8 September 2023 AlmaVivas talk contribs created page Walkthrough for template matching (EMBO2023) (Created page with "Category:Walkthroughs ''Dynamo'' includes a set of tools for location of particles inside tomograms. The most simple one is ''template matching''. == Template matching =...")
- 14:34, 8 September 2023 AlmaVivas talk contribs created page Walkthrough on command line based tilt series alignment (EMBO2023) (Created page with "This last tutorial on tilt series alignment is command line based. When we are under a high data regime, it is, perhaps, the most attractive option. = Create the workflow =...")
- 14:23, 8 September 2023 AlmaVivas talk contribs created page Walkthrough on GUI based tilt series alignment (EMBO2023) (Created page with "This walkthrough guides users through a series of steps on how to use it in GUI-based mode. = Data = Here we will be using the same data as in the previous tutorial. So, if...")
- 13:49, 8 September 2023 AlmaVivas talk contribs created page Walkthrough on manual marker clicking (EMBO2023) (Created page with "This walkthrough describes the tools to ''manually'' locate fiducial markers for tilt series alignment using different graphical tools. ''Automatic'' alignment is described in...")
- 14:40, 28 August 2023 Daniel Castaño talk contribs created page EMBO workshop 2023 (Created page with "The tutorials listed here take place virtually on the 11th and 13th of September of 2023 (14:00-18:30, London time) as part of the EMBO workshop for Image processing in cryoEM...")
- 09:59, 17 August 2023 Daniel Castaño talk contribs created page Walkthrough on PCA through the command line PSI 2023 (Created page with "PCA computations through the command line are governed through ''PCA workflow'' objects. We describe here how to create and handle them: = Cr...")
- 16:14, 16 August 2023 Daniel Castaño talk contribs created page Compact HIV1 walkthrough (PSI 2023) (Created page with "= Goal = This walkthrough was designed to describe and discuss the steps necessary to go from the raw microscope data of a cryo-electron tomography experiment to a high-reso...")
- 15:10, 14 August 2023 AlmaVivas talk contribs created page HIV1 Walkthrough (PSI 2023) (Created page with "= Goal = This walkthrough was designed to describe and discuss the steps necessary to go from the raw microscope data of a cryo-electron tomography experiment to a high-reso...")
- 15:00, 14 August 2023 AlmaVivas talk contribs created page Advanced starters guide (PSI 2023) (Created page with "Category:Walkthroughs This walkthrough uses a small size example based on a real tomogram to cover several tasks. == The example data set == The data is a fraction of a...")
- 14:55, 14 August 2023 AlmaVivas talk contribs created page Walkthrough for template matching (PSI 2023) (Created page with "Category:Walkthroughs ''Dynamo'' includes a set of tools for location of particles inside tomograms. The most simple one is ''template matching''. == Template matching =...")
- 14:26, 14 August 2023 AlmaVivas talk contribs created page File:Vesicle-step--13.png
- 14:26, 14 August 2023 AlmaVivas talk contribs uploaded File:Vesicle-step--13.png
- 14:22, 14 August 2023 AlmaVivas talk contribs created page File:Vesicle-step-16.png
- 14:22, 14 August 2023 AlmaVivas talk contribs uploaded File:Vesicle-step-16.png
- 14:22, 14 August 2023 AlmaVivas talk contribs uploaded File:Vesicle-step-15.png
- 14:22, 14 August 2023 AlmaVivas talk contribs created page File:Vesicle-step-15.png
- 14:21, 14 August 2023 AlmaVivas talk contribs created page File:Vesicle-step-14.png
- 14:21, 14 August 2023 AlmaVivas talk contribs uploaded File:Vesicle-step-14.png
- 14:20, 14 August 2023 AlmaVivas talk contribs created page File:Vesicle-step-12.png
- 14:20, 14 August 2023 AlmaVivas talk contribs uploaded File:Vesicle-step-12.png
- 14:20, 14 August 2023 AlmaVivas talk contribs created page File:Vesicle-step-11.png
- 14:20, 14 August 2023 AlmaVivas talk contribs uploaded File:Vesicle-step-11.png
- 14:19, 14 August 2023 AlmaVivas talk contribs uploaded File:Vesicle-step-10-a-b-c.png
- 14:19, 14 August 2023 AlmaVivas talk contribs created page File:Vesicle-step-10-a-b-c.png
- 14:19, 14 August 2023 AlmaVivas talk contribs created page File:Vesicle-step-9.png
- 14:19, 14 August 2023 AlmaVivas talk contribs uploaded File:Vesicle-step-9.png
- 14:18, 14 August 2023 AlmaVivas talk contribs created page File:Vesicle-step-8.png
- 14:18, 14 August 2023 AlmaVivas talk contribs uploaded File:Vesicle-step-8.png
- 14:17, 14 August 2023 AlmaVivas talk contribs created page File:Vesicle-step-7.png
- 14:17, 14 August 2023 AlmaVivas talk contribs uploaded File:Vesicle-step-7.png
- 14:17, 14 August 2023 AlmaVivas talk contribs created page File:Vesicle-step-6.png
- 14:17, 14 August 2023 AlmaVivas talk contribs uploaded File:Vesicle-step-6.png
- 14:16, 14 August 2023 AlmaVivas talk contribs uploaded File:Vesicle-step-5.png
- 14:16, 14 August 2023 AlmaVivas talk contribs created page File:Vesicle-step-5.png
- 14:16, 14 August 2023 AlmaVivas talk contribs created page File:Vesicle-step-4.png
- 14:16, 14 August 2023 AlmaVivas talk contribs uploaded File:Vesicle-step-4.png
- 14:15, 14 August 2023 AlmaVivas talk contribs created page File:Vesicle-step-2.png
- 14:15, 14 August 2023 AlmaVivas talk contribs uploaded File:Vesicle-step-2.png
- 14:15, 14 August 2023 AlmaVivas talk contribs created page File:Vesicle-step-1.png
- 14:15, 14 August 2023 AlmaVivas talk contribs uploaded File:Vesicle-step-1.png
- 14:15, 14 August 2023 AlmaVivas talk contribs created page Walkthrough on vesicle models (Created page with "This walkthrough is a step-by-step guide that teaches how to extract subtomograms from vesicle-like structures using the Dynamo vesicle models. ===Data=== We are going to de...")
- 13:51, 14 August 2023 User account AlmaVivas talk contribs was created by Daniel Castaño talk contribs
- 13:17, 14 August 2023 User account Alma Vivas talk contribs was created by Daniel Castaño talk contribs and password was sent by email (Dynamo member)
- 11:28, 11 August 2023 Maintenance script talk contribs created page File:Table-from-seed-oversampling.png
- 11:28, 11 August 2023 Maintenance script talk contribs uploaded File:Table-from-seed-oversampling.png
- 11:28, 11 August 2023 Maintenance script talk contribs created page File:Final-results-from-refined-gold-standard-sta.png
- 11:28, 11 August 2023 Maintenance script talk contribs uploaded File:Final-results-from-refined-gold-standard-sta.png
- 11:28, 11 August 2023 Maintenance script talk contribs created page File:Numerical-parameters-gui.png
- 11:28, 11 August 2023 Maintenance script talk contribs uploaded File:Numerical-parameters-gui.png
- 11:28, 11 August 2023 Maintenance script talk contribs created page File:Galactus original.png
- 11:28, 11 August 2023 Maintenance script talk contribs uploaded File:Galactus original.png
- 11:27, 11 August 2023 Maintenance script talk contribs created page File:Av ali ts1.png
- 11:27, 11 August 2023 Maintenance script talk contribs uploaded File:Last-average-for-coarse-half-maps.png
- 11:27, 11 August 2023 Maintenance script talk contribs created page File:Last-average-for-coarse-half-maps.png
- 11:27, 11 August 2023 Maintenance script talk contribs uploaded File:Av ali ts1.png
- 11:27, 11 August 2023 Maintenance script talk contribs created page File:Serial log.png
- 11:27, 11 August 2023 Maintenance script talk contribs uploaded File:Serial log.png
- 11:27, 11 August 2023 Maintenance script talk contribs created page File:Last-average-coarse-half-maps.png
- 11:27, 11 August 2023 Maintenance script talk contribs uploaded File:Last-average-coarse-half-maps.png
- 11:27, 11 August 2023 Maintenance script talk contribs created page File:Refine 12.png
- 11:27, 11 August 2023 Maintenance script talk contribs uploaded File:Refine 12.png
- 11:27, 11 August 2023 Maintenance script talk contribs created page File:Final chimera HIV1.png
- 11:27, 11 August 2023 Maintenance script talk contribs uploaded File:Final chimera HIV1.png
- 11:27, 11 August 2023 Maintenance script talk contribs created page File:First-per-tomogram-and-averages-of-averages-project-configuration.png
- 11:27, 11 August 2023 Maintenance script talk contribs uploaded File:First-per-tomogram-and-averages-of-averages-project-configuration.png
- 11:26, 11 August 2023 Maintenance script talk contribs created page File:Refined-half-maps-alignment-configuration.png
- 11:26, 11 August 2023 Maintenance script talk contribs uploaded File:Refined-half-maps-alignment-configuration.png
- 11:26, 11 August 2023 Maintenance script talk contribs created page File:Chimera-volume-tracer.png
- 11:26, 11 August 2023 Maintenance script talk contribs uploaded File:Chimera-volume-tracer.png
- 11:26, 11 August 2023 Maintenance script talk contribs uploaded File:Tilt lines.png
- 11:26, 11 August 2023 Maintenance script talk contribs created page File:Tilt lines.png
- 11:26, 11 August 2023 Maintenance script talk contribs created page File:Last-average-second-per-tomogram-average.png
- 11:26, 11 August 2023 Maintenance script talk contribs uploaded File:Last-average-second-per-tomogram-average.png
- 11:26, 11 August 2023 Maintenance script talk contribs created page File:Geometrical-primitive-local-model-partition.jpeg
- 11:26, 11 August 2023 Maintenance script talk contribs uploaded File:Geometrical-primitive-local-model-partition.jpeg
- 11:26, 11 August 2023 Maintenance script talk contribs created page File:Motivation-file-naming-convention.png
- 11:26, 11 August 2023 Maintenance script talk contribs uploaded File:Motivation-file-naming-convention.png
- 11:26, 11 August 2023 Maintenance script talk contribs created page File:Noise-configuration-chimera.png
- 11:26, 11 August 2023 Maintenance script talk contribs uploaded File:Noise-configuration-chimera.png
- 11:26, 11 August 2023 Maintenance script talk contribs created page File:An example of a gain reference.png
- 11:26, 11 August 2023 Maintenance script talk contribs uploaded File:FSC wrong phaseflip.png
- 11:26, 11 August 2023 Maintenance script talk contribs created page File:FSC wrong phaseflip.png
- 11:26, 11 August 2023 Maintenance script talk contribs uploaded File:An example of a gain reference.png
- 11:26, 11 August 2023 Maintenance script talk contribs created page File:Gmm-population-clasification.png
- 11:26, 11 August 2023 Maintenance script talk contribs uploaded File:Gmm-population-clasification.png
- 11:26, 11 August 2023 Maintenance script talk contribs created page File:Empty-sta-project-dcp-gui.png
- 11:26, 11 August 2023 Maintenance script talk contribs uploaded File:Empty-sta-project-dcp-gui.png
- 11:25, 11 August 2023 Maintenance script talk contribs created page File:Last-average-first-per-tomogram-average.png
- 11:25, 11 August 2023 Maintenance script talk contribs uploaded File:Initial-reference-project-configuration.png
- 11:25, 11 August 2023 Maintenance script talk contribs created page File:Initial-reference-project-configuration.png
- 11:25, 11 August 2023 Maintenance script talk contribs uploaded File:Last-average-first-per-tomogram-average.png
- 11:25, 11 August 2023 Maintenance script talk contribs created page File:Range of relion initial positions.png
- 11:25, 11 August 2023 Maintenance script talk contribs uploaded File:Range of relion initial positions.png
- 11:25, 11 August 2023 Maintenance script talk contribs created page File:Default-mask-project-dcp-gui.png
- 11:25, 11 August 2023 Maintenance script talk contribs uploaded File:Default-mask-project-dcp-gui.png
- 11:25, 11 August 2023 Maintenance script talk contribs created page File:Last-average-from-initial-reference-project.png
- 11:25, 11 August 2023 Maintenance script talk contribs uploaded File:Last-average-from-initial-reference-project.png
- 11:25, 11 August 2023 Maintenance script talk contribs created page File:NotDW vs DW.png
- 11:25, 11 August 2023 Maintenance script talk contribs uploaded File:NotDW vs DW.png
- 11:24, 11 August 2023 Maintenance script talk contribs created page File:Support-measurement-tool-for-oversampling-configuration.png
- 11:24, 11 August 2023 Maintenance script talk contribs uploaded File:Support-measurement-tool-for-oversampling-configuration.png
- 11:24, 11 August 2023 Maintenance script talk contribs created page File:Final-result-from-refined-gold-standard-sta.png
- 11:24, 11 August 2023 Maintenance script talk contribs uploaded File:Final-result-from-refined-gold-standard-sta.png
- 11:24, 11 August 2023 Maintenance script talk contribs created page File:Dcm-gui-create-pre-binned.png
- 11:24, 11 August 2023 Maintenance script talk contribs uploaded File:Galactus pre.png
- 11:24, 11 August 2023 Maintenance script talk contribs created page File:Galactus pre.png
- 11:24, 11 August 2023 Maintenance script talk contribs uploaded File:Dcm-gui-create-pre-binned.png
- 11:23, 11 August 2023 Maintenance script talk contribs created page File:Subboxing-tbl-vs-last-ite-per-tomogram-project-tbl.png
- 11:23, 11 August 2023 Maintenance script talk contribs uploaded File:Subboxing-tbl-vs-last-ite-per-tomogram-project-tbl.png
- 11:23, 11 August 2023 Maintenance script talk contribs created page File:Sanity check centering.png
- 11:23, 11 August 2023 Maintenance script talk contribs uploaded File:Sanity check centering.png
- 11:23, 11 August 2023 Maintenance script talk contribs created page File:Refine 14f.png
- 11:23, 11 August 2023 Maintenance script talk contribs uploaded File:Refine 14f.png
- 11:23, 11 August 2023 Maintenance script talk contribs created page File:Second-per-tomogram-project-configuration.png
- 11:23, 11 August 2023 Maintenance script talk contribs uploaded File:Second-per-tomogram-project-configuration.png
- 11:23, 11 August 2023 Maintenance script talk contribs created page File:FSC mask Z.png
- 11:23, 11 August 2023 Maintenance script talk contribs uploaded File:FSC mask Z.png
- 11:23, 11 August 2023 Maintenance script talk contribs created page File:Alignment-project-main-block-iterative-workflow.png
- 11:23, 11 August 2023 Maintenance script talk contribs uploaded File:Alignment-project-main-block-iterative-workflow.png
- 11:23, 11 August 2023 Maintenance script talk contribs uploaded File:Average-bin-2-from-seed-oversampling.png
- 11:23, 11 August 2023 Maintenance script talk contribs created page File:Average-bin-2-from-seed-oversampling.png
- 11:22, 11 August 2023 Maintenance script talk contribs created page File:Step-one-preprocesing-chimera.png
- 11:22, 11 August 2023 Maintenance script talk contribs uploaded File:Step-one-preprocesing-chimera.png
- 11:22, 11 August 2023 Maintenance script talk contribs created page File:Chiera-reference-center-gui.png
- 11:22, 11 August 2023 Maintenance script talk contribs uploaded File:Chiera-reference-center-gui.png
- 11:22, 11 August 2023 Maintenance script talk contribs created page File:Reminder-save-models-to-disk.png
- 11:22, 11 August 2023 Maintenance script talk contribs uploaded File:Reminder-save-models-to-disk.png
- 11:22, 11 August 2023 Maintenance script talk contribs created page File:Isosurface-final-structure-density-map-chimera.png
- 11:22, 11 August 2023 Maintenance script talk contribs uploaded File:Isosurface-final-structure-density-map-chimera.png
- 11:22, 11 August 2023 Maintenance script talk contribs created page File:Refine 14f maskrelion.png
- 11:22, 11 August 2023 Maintenance script talk contribs uploaded File:Refine 14f maskrelion.png
- 11:22, 11 August 2023 Maintenance script talk contribs created page File:Dcm-gui-open-pre-binned-tomoslice.png
- 11:22, 11 August 2023 Maintenance script talk contribs uploaded File:Dcm-gui-open-pre-binned-tomoslice.png
- 11:22, 11 August 2023 Maintenance script talk contribs created page File:Dshow HIV1 raw.png
- 11:22, 11 August 2023 Maintenance script talk contribs uploaded File:Dshow HIV1 raw.png
- 11:22, 11 August 2023 Maintenance script talk contribs created page File:Tomoslice-create-dipole-set.png
- 11:22, 11 August 2023 Maintenance script talk contribs uploaded File:Tomoslice-create-dipole-set.png
- 11:22, 11 August 2023 Maintenance script talk contribs created page File:Vesicle-step-3.png
- 11:22, 11 August 2023 Maintenance script talk contribs uploaded File:Vesicle-step-3.png
- 11:22, 11 August 2023 Maintenance script talk contribs created page File:Ali ts1.png
- 11:22, 11 August 2023 Maintenance script talk contribs uploaded File:Ali ts1.png
- 11:21, 11 August 2023 Maintenance script talk contribs created page File:Final FSC curve.png
- 11:21, 11 August 2023 Maintenance script talk contribs uploaded File:Final FSC curve.png
- 11:15, 11 August 2023 Maintenance script talk contribs created page File:Environment-parameters-gui.png
- 11:15, 11 August 2023 Maintenance script talk contribs uploaded File:Environment-parameters-gui.png
- 11:09, 11 August 2023 Maintenance script talk contribs created page File:Galactus TMpre.png
- 11:09, 11 August 2023 Maintenance script talk contribs uploaded File:Galactus TMpre.png
- 11:09, 11 August 2023 Maintenance script talk contribs created page File:Image set section.png
- 11:09, 11 August 2023 Maintenance script talk contribs uploaded File:Image set section.png
- 10:42, 11 August 2023 Maintenance script talk contribs created page File:RELION refine IO.png
- 10:42, 11 August 2023 Maintenance script talk contribs uploaded File:RELION refine IO.png
- 10:42, 11 August 2023 Maintenance script talk contribs created page File:RELION psuedo reconstuct.png
- 10:42, 11 August 2023 Maintenance script talk contribs uploaded File:RELION psuedo reconstuct.png
- 10:42, 11 August 2023 Maintenance script talk contribs uploaded File:RELION pseudo IO.png
- 10:42, 11 August 2023 Maintenance script talk contribs created page File:RELION pseudo IO.png
- 10:42, 11 August 2023 Maintenance script talk contribs created page File:RELION reconstruct average.png
- 10:42, 11 August 2023 Maintenance script talk contribs uploaded File:RELION reconstruct average.png
- 10:42, 11 August 2023 Maintenance script talk contribs created page File:RELION reconstruct IO.png
- 10:42, 11 August 2023 Maintenance script talk contribs uploaded File:RELION reconstruct IO.png
- 10:42, 11 August 2023 Maintenance script talk contribs created page File:Refine 7.png
- 10:42, 11 August 2023 Maintenance script talk contribs uploaded File:Refine 7.png
- 10:41, 11 August 2023 Maintenance script talk contribs uploaded File:Post process sharpen.png
- 10:41, 11 August 2023 Maintenance script talk contribs created page File:Post process sharpen.png
- 10:41, 11 August 2023 Maintenance script talk contribs created page File:HIV mask m.png
- 10:41, 11 August 2023 Maintenance script talk contribs uploaded File:HIV mask m.png
- 10:41, 11 August 2023 Maintenance script talk contribs created page File:HIV mask s.png
- 10:41, 11 August 2023 Maintenance script talk contribs uploaded File:HIV mask s.png
- 10:41, 11 August 2023 Maintenance script talk contribs created page File:H1 d h2.png
- 10:41, 11 August 2023 Maintenance script talk contribs uploaded File:H1 d h2.png
- 10:41, 11 August 2023 Maintenance script talk contribs created page File:Example of healty FSC.png
- 10:41, 11 August 2023 Maintenance script talk contribs uploaded File:Example of healty FSC.png
- 10:41, 11 August 2023 Maintenance script talk contribs uploaded File:Synthetic-height-reference.png
- 10:41, 11 August 2023 Maintenance script talk contribs created page File:Coarse-half-maps-alignment-configuration.png
- 10:41, 11 August 2023 Maintenance script talk contribs uploaded File:Coarse-half-maps-alignment-configuration.png
- 10:41, 11 August 2023 Maintenance script talk contribs uploaded File:Adapted-mask.png
- 10:41, 11 August 2023 Maintenance script talk contribs created page File:Adapted-mask.png
- 10:41, 11 August 2023 Maintenance script talk contribs created page File:Synthetic-height-reference.png
- 10:40, 11 August 2023 Maintenance script talk contribs created page File:Final-average-from-average-of-averages.png
- 10:40, 11 August 2023 Maintenance script talk contribs uploaded File:Final-average-from-average-of-averages.png
- 10:40, 11 August 2023 Maintenance script talk contribs created page File:3d-silce-along-with-active-pool-model.png
- 10:40, 11 August 2023 Maintenance script talk contribs uploaded File:3d-silce-along-with-active-pool-model.png
- 10:40, 11 August 2023 Maintenance script talk contribs created page File:Schematic-representations-of-typical-immature-viral-morphologies.png
- 10:40, 11 August 2023 Maintenance script talk contribs uploaded File:Ali mask Z.png
- 10:40, 11 August 2023 Maintenance script talk contribs created page File:Ali mask Z.png
- 10:40, 11 August 2023 Maintenance script talk contribs uploaded File:Schematic-representations-of-typical-immature-viral-morphologies.png
- 10:40, 11 August 2023 Maintenance script talk contribs created page File:Support-measure--tool-for-oversampling-configuration.png
- 10:40, 11 August 2023 Maintenance script talk contribs uploaded File:Support-measure--tool-for-oversampling-configuration.png
- 10:40, 11 August 2023 Maintenance script talk contribs created page File:AWF GB definitions.png
- 10:40, 11 August 2023 Maintenance script talk contribs uploaded File:AWF GB definitions.png
- 10:40, 11 August 2023 Maintenance script talk contribs created page File:Chimera-particles-center-gui.png
- 10:40, 11 August 2023 Maintenance script talk contribs uploaded File:Chimera-particles-center-gui.png
- 10:40, 11 August 2023 Maintenance script talk contribs uploaded File:DW DW and CTF.png
- 10:40, 11 August 2023 Maintenance script talk contribs created page File:DW DW and CTF.png
- 10:40, 11 August 2023 Maintenance script talk contribs created page File:Concept of fiducial alignment.png
- 10:40, 11 August 2023 Maintenance script talk contribs uploaded File:Concept of fiducial alignment.png
- 10:40, 11 August 2023 Maintenance script talk contribs created page File:Ctffind4 on unaligned TS.png
- 10:40, 11 August 2023 Maintenance script talk contribs uploaded File:Ctffind4 on unaligned TS.png
- 10:40, 11 August 2023 Maintenance script talk contribs created page File:Galactus TMor.png
- 10:40, 11 August 2023 Maintenance script talk contribs uploaded File:Galactus TMor.png
- 10:39, 11 August 2023 Maintenance script talk contribs created page File:Ali mask y.png
- 10:39, 11 August 2023 Maintenance script talk contribs uploaded File:Ali mask y.png
- 10:39, 11 August 2023 Maintenance script talk contribs created page File:CTF problems in cryoem.png
- 10:39, 11 August 2023 Maintenance script talk contribs uploaded File:CTF problems in cryoem.png
- 10:39, 11 August 2023 Maintenance script talk contribs created page File:Exposition scheme HIV1.png
- 10:39, 11 August 2023 Maintenance script talk contribs uploaded File:Exposition scheme HIV1.png
- 10:38, 11 August 2023 Maintenance script talk contribs created page File:General pipeline.png
- 10:38, 11 August 2023 Maintenance script talk contribs uploaded File:General pipeline.png
- 10:38, 11 August 2023 Maintenance script talk contribs created page File:Refine 2.png
- 10:38, 11 August 2023 Maintenance script talk contribs uploaded File:Refine 2.png
- 10:26, 11 August 2023 Maintenance script talk contribs uploaded File:Post process IO.png
- 10:26, 11 August 2023 Maintenance script talk contribs created page File:Post process IO.png
- 10:18, 11 August 2023 Andres.jimenez talk contribs imported HIV1 workshop by file upload (1 revision)
- 10:10, 11 August 2023 User account Andres.jimenez talk contribs was created automatically
- 09:18, 7 August 2023 Daniel Castaño talk contribs created page SciLifeLab Workshop for Cryo Electron Tomography Processing (Created page with "= Workshop = The PSI Dynamo workshop will take place from October the 24th to October the 27th in the SciLifeLab at Stockholm. The workshop provides hands-on training in all...")
- 19:16, 31 July 2023 Daniel Castaño talk contribs created page PSI Workshop 2023 (Created page with " = Contents = {| class="wikitable" style="margin:auto" |+ Day 1: Morning |- ! Header text !! Time !! Subject |- | Example || 40 min|| General Introduction |- | Example || 80...")
- 10:12, 21 July 2023 Daniel Castaño talk contribs created page File:PictureForWikiiCTF.png
- 10:12, 21 July 2023 Daniel Castaño talk contribs uploaded File:PictureForWikiiCTF.png
- 09:18, 8 July 2023 Daniel Castaño talk contribs created page Clouds of points defined on a tilt series (format) (Created page with "This is the most basic format to define sets of coordinates on a tilt series. = Basic Format description= It is simply a numerical matrix, where first and second columns des...")
- 09:00, 8 July 2023 Daniel Castaño talk contribs uploaded File:ChangeColorMarkersInDmarkers.png
- 09:00, 8 July 2023 Daniel Castaño talk contribs created page File:ChangeColorMarkersInDmarkers.png
- 08:58, 8 July 2023 Daniel Castaño talk contribs created page Depicting a cloud of observations on a tilt series (Created page with "There are several ways of depicting a cloud of points on a set micrographs. =dmarkers= == Depict a static cloud of point == dmarkers <br> offers the possibility of <code>...")
- 08:42, 8 July 2023 Daniel Castaño talk contribs created page Visualization tricks (Created page with " = Tilt series = == Depicting a cloud of points on a tilt series == = Tomograms = = Images = Category: Tricks")
- 07:33, 6 July 2023 Daniel Castaño talk contribs created page SciLife Lab Workshop for Subtomogram Averaging 2023 (Created page with "= Workshop = The = Schedule = This schedule is orientative. We are in the process of designing the definitive schedule and contents, which will be adapted to the profil...")
- 15:13, 6 September 2021 Stefano Scaramuzza talk contribs created page Advanced starters guide (EMBO2021) (Created page with "Category:Walkthroughs This walkthrough uses a small size example based on a real tomogram to cover several tasks. == The example data set == The data is a fraction of a...")
- 15:07, 6 September 2021 Stefano Scaramuzza talk contribs created page Walkthrough on GUI based tilt series alignment (EMBO2021) (Created page with "''Dynamo'' includes a package for automated alignment and reconstruction of tilt series. This walkthrough guides users through a series of steps on how to use it in GUI-based...")
- 14:40, 6 September 2021 Stefano Scaramuzza talk contribs created page Starters guide (EMBO2021) (Created page with "This tutorial shows how to manually pick particles in a tomogram, extract them, align and classify them. This tutorial is a shortened version of the original Starters_guide...")
- 14:31, 6 September 2021 Stefano Scaramuzza talk contribs created page File:AlignCommandLine autocompletionOfUserObjectEMBO2021.png
- 14:31, 6 September 2021 Stefano Scaramuzza talk contribs uploaded File:AlignCommandLine autocompletionOfUserObjectEMBO2021.png
- 14:31, 6 September 2021 Stefano Scaramuzza talk contribs created page Walkthrough on command line based tilt series alignment (EMBO2021) (Created page with "Dynamo includes a package for automated alignment and reconstruction of tilt series. This walkthrough guides users through a series of steps on how to use it in command line b...")
- 10:58, 18 August 2021 Stefano Scaramuzza talk contribs uploaded a new version of File:StartersGuideResultsClassification2.png
- 10:55, 18 August 2021 Stefano Scaramuzza talk contribs created page File:StartersGuideResultsClassification2.png
- 10:55, 18 August 2021 Stefano Scaramuzza talk contribs uploaded File:StartersGuideResultsClassification2.png
- 16:12, 17 August 2021 Stefano Scaramuzza talk contribs uploaded a new version of File:StartersGuideResultsAlignment.png
- 15:25, 17 August 2021 Stefano Scaramuzza talk contribs uploaded a new version of File:StartersGuideFigure10.png
- 14:46, 17 August 2021 Stefano Scaramuzza talk contribs created page File:StartersGuideAli1.png
- 14:46, 17 August 2021 Stefano Scaramuzza talk contribs uploaded File:StartersGuideAli1.png
- 14:34, 17 August 2021 Stefano Scaramuzza talk contribs uploaded File:StartersGuideGallery5.png
- 14:34, 17 August 2021 Stefano Scaramuzza talk contribs created page File:StartersGuideGallery5.png
- 14:30, 17 August 2021 Stefano Scaramuzza talk contribs created page File:StartersGuideGallery4.png
- 14:30, 17 August 2021 Stefano Scaramuzza talk contribs uploaded File:StartersGuideGallery4.png
- 14:18, 17 August 2021 Stefano Scaramuzza talk contribs uploaded a new version of File:StartersGuideGallery3.png
- 13:17, 17 August 2021 Stefano Scaramuzza talk contribs created page File:StartersGuideGallery3.png
- 13:17, 17 August 2021 Stefano Scaramuzza talk contribs uploaded File:StartersGuideGallery3.png
- 13:10, 17 August 2021 Stefano Scaramuzza talk contribs created page File:StartersGuideGallery2.png
- 13:10, 17 August 2021 Stefano Scaramuzza talk contribs uploaded File:StartersGuideGallery2.png
- 12:35, 17 August 2021 Stefano Scaramuzza talk contribs created page File:StartersGuideGallery.png
- 12:35, 17 August 2021 Stefano Scaramuzza talk contribs uploaded File:StartersGuideGallery.png
- 10:46, 13 August 2021 Stefano Scaramuzza talk contribs uploaded a new version of File:StartersGuideCrop.png
- 10:44, 13 August 2021 Stefano Scaramuzza talk contribs uploaded a new version of File:StartersGuideSelectModels.png
- 10:42, 13 August 2021 Stefano Scaramuzza talk contribs created page File:StartersGuideParticles.png
- 10:42, 13 August 2021 Stefano Scaramuzza talk contribs uploaded File:StartersGuideParticles.png
- 10:42, 13 August 2021 Stefano Scaramuzza talk contribs created page File:StartersGuideShow.png
- 10:42, 13 August 2021 Stefano Scaramuzza talk contribs uploaded File:StartersGuideShow.png
- 10:38, 13 August 2021 Stefano Scaramuzza talk contribs uploaded File:StartersGuideCrop.png
- 10:38, 13 August 2021 Stefano Scaramuzza talk contribs created page File:StartersGuideCrop.png
- 10:37, 13 August 2021 Stefano Scaramuzza talk contribs created page File:StartersGuideSelectModels.png
- 10:37, 13 August 2021 Stefano Scaramuzza talk contribs uploaded File:StartersGuideSelectModels.png
- 10:37, 13 August 2021 Stefano Scaramuzza talk contribs created page File:StartersGuideopenVolumeList.png
- 10:37, 13 August 2021 Stefano Scaramuzza talk contribs uploaded File:StartersGuideopenVolumeList.png
- 09:49, 13 August 2021 Stefano Scaramuzza talk contribs uploaded a new version of File:StartersGuideFigure6.png
- 09:48, 13 August 2021 Stefano Scaramuzza talk contribs created page File:StartersGuideUpdate.png
- 09:48, 13 August 2021 Stefano Scaramuzza talk contribs uploaded File:StartersGuideUpdate.png
- 09:48, 13 August 2021 Stefano Scaramuzza talk contribs uploaded a new version of File:StartersGuideFigure4.png
- 09:34, 13 August 2021 Stefano Scaramuzza talk contribs uploaded File:StartersTomoSlice.png
- 09:34, 13 August 2021 Stefano Scaramuzza talk contribs created page File:StartersTomoSlice.png
- 15:36, 12 August 2021 Stefano Scaramuzza talk contribs created page Starters guide (workshop version) (Created page with "==Particle picking and ''Dynamo'' catalogues== We assume that your tomograms are already generated using external packages (i.e. IMOD, Protomo, Inspect3D, TOM); for this tutor...")
- 14:47, 12 August 2021 Stefano Scaramuzza talk contribs uploaded a new version of File:Membrane step 22.png
- 14:44, 12 August 2021 Stefano Scaramuzza talk contribs created page File:Membrane step 212.png
- 14:44, 12 August 2021 Stefano Scaramuzza talk contribs uploaded File:Membrane step 212.png
- 14:43, 12 August 2021 Stefano Scaramuzza talk contribs uploaded a new version of File:Membrane step 21.png
- 14:12, 12 August 2021 Stefano Scaramuzza talk contribs uploaded a new version of File:Membrane step 16.png
- 14:02, 12 August 2021 Stefano Scaramuzza talk contribs uploaded a new version of File:Membrane step 14.png
- 13:16, 12 August 2021 Stefano Scaramuzza talk contribs uploaded a new version of File:Membrane step 3.png
- 12:56, 12 August 2021 Stefano Scaramuzza talk contribs created page File:Membrane step 23.png
- 12:56, 12 August 2021 Stefano Scaramuzza talk contribs uploaded File:Membrane step 23.png
- 12:56, 12 August 2021 Stefano Scaramuzza talk contribs created page File:Membrane step 22.png
- 12:56, 12 August 2021 Stefano Scaramuzza talk contribs uploaded File:Membrane step 22.png
- 12:55, 12 August 2021 Stefano Scaramuzza talk contribs created page File:Membrane step 21.png
- 12:55, 12 August 2021 Stefano Scaramuzza talk contribs uploaded File:Membrane step 21.png
- 12:55, 12 August 2021 Stefano Scaramuzza talk contribs created page File:Membrane step 20.png
- 12:55, 12 August 2021 Stefano Scaramuzza talk contribs uploaded File:Membrane step 20.png
- 12:55, 12 August 2021 Stefano Scaramuzza talk contribs uploaded File:Membrane step 19.png
- 12:55, 12 August 2021 Stefano Scaramuzza talk contribs created page File:Membrane step 19.png
- 12:55, 12 August 2021 Stefano Scaramuzza talk contribs created page File:Membrane step 18.png
- 12:55, 12 August 2021 Stefano Scaramuzza talk contribs uploaded File:Membrane step 18.png
- 12:55, 12 August 2021 Stefano Scaramuzza talk contribs created page File:Membrane step 17.png
- 12:55, 12 August 2021 Stefano Scaramuzza talk contribs uploaded File:Membrane step 17.png
- 12:55, 12 August 2021 Stefano Scaramuzza talk contribs created page File:Membrane step 16.png
- 12:55, 12 August 2021 Stefano Scaramuzza talk contribs uploaded File:Membrane step 16.png
- 12:54, 12 August 2021 Stefano Scaramuzza talk contribs created page File:Membrane step 14.png
- 12:54, 12 August 2021 Stefano Scaramuzza talk contribs uploaded File:Membrane step 14.png
- 12:54, 12 August 2021 Stefano Scaramuzza talk contribs created page File:Membrane step 13.png
- 12:54, 12 August 2021 Stefano Scaramuzza talk contribs uploaded File:Membrane step 13.png
- 12:54, 12 August 2021 Stefano Scaramuzza talk contribs created page File:Membrane step 12.png
- 12:54, 12 August 2021 Stefano Scaramuzza talk contribs uploaded File:Membrane step 12.png
- 12:54, 12 August 2021 Stefano Scaramuzza talk contribs created page File:Membrane step 11.png
- 12:54, 12 August 2021 Stefano Scaramuzza talk contribs uploaded File:Membrane step 11.png
- 12:54, 12 August 2021 Stefano Scaramuzza talk contribs created page File:Membrane step 10.png
- 12:54, 12 August 2021 Stefano Scaramuzza talk contribs uploaded File:Membrane step 10.png
- 12:54, 12 August 2021 Stefano Scaramuzza talk contribs created page File:Membrane step 9.png
- 12:54, 12 August 2021 Stefano Scaramuzza talk contribs uploaded File:Membrane step 9.png
- 12:54, 12 August 2021 Stefano Scaramuzza talk contribs created page File:Membrane step 8.png
- 12:54, 12 August 2021 Stefano Scaramuzza talk contribs uploaded File:Membrane step 8.png
- 12:54, 12 August 2021 Stefano Scaramuzza talk contribs created page File:Membrane step 7.png
- 12:54, 12 August 2021 Stefano Scaramuzza talk contribs uploaded File:Membrane step 7.png