User contributions for AlmaVivas

11 April 2024

• 14:1614:16, 11 April 2024 diff hist −1 Walkthrough on hexagonal lattice coherence through neighborhood analysis →Local analysis - lattice coherence
• 14:1614:16, 11 April 2024 diff hist +47 Walkthrough on hexagonal lattice coherence through neighborhood analysis →Local analysis - lattice coherence

8 April 2024

• 11:2011:20, 8 April 2024 diff hist +47,302 N Complete walkthrough on FHV virus (Göttingen 2024) Created page with "Category:Walkthroughs This walkthrough uses a small size example based on a real tomogram to cover several tasks. == The example data set == The data is a fraction of a..."
• 11:2011:20, 8 April 2024 diff hist +58 Göttingen Workshop 2024 →Time Schedule
• 11:1911:19, 8 April 2024 diff hist +15,560 N Starters guide (Göttingen 2024) Created page with "This tutorial shows how to manually pick particles in a tomogram, extract them, align and classify them. This tutorial is a shortened version of the original Starters_guide..."
• 11:1911:19, 8 April 2024 diff hist +18 Göttingen Workshop 2024 →Time Schedule
• 11:1711:17, 8 April 2024 diff hist +106,626 N High resolution walkthrough with HIV1 (Göttingen 2024) Created page with "= Goal of the walktrough = This walktrough was designed to describe and discuss the steps necessary to go from the raw microscope data of a cryo-electron tomography experimen..."
• 11:1711:17, 8 April 2024 diff hist +18 Göttingen Workshop 2024 →Time Schedule
• 11:1611:16, 8 April 2024 diff hist +25,806 N Walkthrough on PCA through the command line (Göttingen 2024) Created page with "PCA computations through the command line are governed through ''PCA workflow'' objects. We describe here how to create and handle them: = C..."
• 11:1511:15, 8 April 2024 diff hist +16 Göttingen Workshop 2024 →Time Schedule
• 11:1411:14, 8 April 2024 diff hist −128 Walkthrough for template matching/ Göttingen 2024 No edit summary
• 11:1211:12, 8 April 2024 diff hist +26,199 N Walkthrough for template matching/ Göttingen 2024 Created page with "Category:Walkthroughs ''Dynamo'' includes a set of tools for location of particles inside tomograms. The most simple one is ''template matching''. == Template matching =..."
• 11:1011:10, 8 April 2024 diff hist +11 Göttingen Workshop 2024 →Time Schedule
• 09:0609:06, 8 April 2024 diff hist 0 Walkthrough on hexagonal lattice coherence through neighborhood analysis No edit summary
• 09:0009:00, 8 April 2024 diff hist −14 Walkthrough on hexagonal lattice coherence through neighborhood analysis No edit summary
• 08:5808:58, 8 April 2024 diff hist 0 N File:First-order-distance-clusters-three-different-vlps.png No edit summary current
• 08:5708:57, 8 April 2024 diff hist 0 N File:Average-overplot-hexagonal-lattice-measurements.png No edit summary current
• 08:5708:57, 8 April 2024 diff hist 0 N File:Selected-vlps.png No edit summary current
• 08:5708:57, 8 April 2024 diff hist 0 N File:Tbl-positions-normals-vlps.png No edit summary current
• 08:5508:55, 8 April 2024 diff hist +7,529 N Walkthrough on hexagonal lattice coherence through neighborhood analysis Created page with "Category:Walkthroughs ==Neighborhood analysis== Neighbourhood analysis stands at the forefront of methods used to investigate geometrical lattice parameters and offers..."

6 March 2024

• 12:2912:29, 6 March 2024 diff hist +352 Compact HIV1 walkthrough (PSI 2023) →Subtomogram averaging
• 12:2812:28, 6 March 2024 diff hist +352 HIV1 Walkthrough (PSI 2023) →Subtomogram averaging
• 12:2712:27, 6 March 2024 diff hist +816 HIV1 workshop →Subtomogram averaging
• 12:2712:27, 6 March 2024 diff hist +282 HIV1 workshop →Dynamo models and particles
• 12:2612:26, 6 March 2024 diff hist +438 HIV1 workshop →Extraction of coarse half maps
• 12:2612:26, 6 March 2024 diff hist +352 High Resolution workflow for HIV1 (SciLifeLab 2023) →Extraction of coarse half maps
• 11:2711:27, 6 March 2024 diff hist +1 High resolution walkthrough with HIV1 →Extraction of coarse half maps
• 11:2311:23, 6 March 2024 diff hist +351 High resolution walkthrough with HIV1 →Extraction of coarse half maps

5 March 2024

• 15:5515:55, 5 March 2024 diff hist +912 High Resolution workflow for HIV1 (SciLifeLab 2023) →Subtomogram averaging
• 15:5415:54, 5 March 2024 diff hist +282 High Resolution workflow for HIV1 (SciLifeLab 2023) →Dynamo models and particles
• 15:5315:53, 5 March 2024 diff hist +912 HIV1 Walkthrough (PSI 2023) →Subtomogram averaging
• 15:5315:53, 5 March 2024 diff hist +282 HIV1 Walkthrough (PSI 2023) →Dynamo models and particles
• 15:1515:15, 5 March 2024 diff hist −271 Compact HIV1 walkthrough (PSI 2023) →Preparation and management of data
• 14:3314:33, 5 March 2024 diff hist +710 Compact HIV1 walkthrough (PSI 2023) →Subtomogram averaging
• 14:3114:31, 5 March 2024 diff hist +1,033 Compact HIV1 walkthrough (PSI 2023) →Dynamo models and particles
• 14:0714:07, 5 March 2024 diff hist +10 High resolution walkthrough with HIV1 →Extraction of first per tomogram average
• 13:5913:59, 5 March 2024 diff hist 0 N File:Final-sta-result-from-refined-gold-standard-sta.png No edit summary current
• 13:5813:58, 5 March 2024 diff hist 0 N File:Isosurface-final-structure-density-map-chimera-sta.png No edit summary current
• 13:5613:56, 5 March 2024 diff hist +4 High resolution walkthrough with HIV1 →Extraction of refined half maps
• 13:5513:55, 5 March 2024 diff hist 0 N File:Adapted-mask-sta.png No edit summary current
• 13:5513:55, 5 March 2024 diff hist 0 N File:Refined-half-maps-alignment-configuration-sta.png No edit summary current
• 13:5413:54, 5 March 2024 diff hist +101 High resolution walkthrough with HIV1 →Extraction of refined half maps
• 11:5911:59, 5 March 2024 diff hist 0 N File:Last-average-for-coarse-half-maps-sta.png No edit summary current
• 11:5811:58, 5 March 2024 diff hist 0 N File:Coarse-half-maps-alignment-configuration-sta.png No edit summary current
• 11:5711:57, 5 March 2024 diff hist +3 High resolution walkthrough with HIV1 →Extraction of coarse half maps
• 11:5311:53, 5 March 2024 diff hist 0 N File:Synthetic-height-reference-sta.png No edit summary current
• 11:5211:52, 5 March 2024 diff hist 0 N File:Gmm-population-clasification-sta.png No edit summary current
• 11:5111:51, 5 March 2024 diff hist +87 High resolution walkthrough with HIV1 →Extraction of coarse half maps
• 11:3111:31, 5 March 2024 diff hist 0 N File:Last-average-second-per-tomogram-average-sta.png No edit summary current
• 11:3011:30, 5 March 2024 diff hist 0 N File:Subboxing-tbl-vs-last-ite-per-tomogram-project-tbl-sta.png No edit summary current