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• Dcp GUI
  [[Category : dcp ]] The GUI <tt> dcp </tt> (for Dynamo Current Project) is the main tool for interactive design
  3 KB (503 words) - 21:57, 13 September 2017

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• Dcp GUI
  [[Category : dcp ]] The GUI <tt> dcp </tt> (for Dynamo Current Project) is the main tool for interactive design
  3 KB (503 words) - 21:57, 13 September 2017
• Shift limits
  == In the dcp GUI ==
  1 KB (245 words) - 08:13, 26 October 2016
• Subtomogram alignment
  ...t projects can be managed from the command line, or more easily with the [[dcp GUI]].
  674 bytes (101 words) - 17:02, 29 April 2016
• Adaptive bandpass filtering
  ...arameters can be chosen by the user. When designing the project from the [[dcp GUI]], they are available in ''Numerical parameters > General'' ==Creating an ABF project in {{t|dcp}}==
  4 KB (666 words) - 07:10, 28 November 2017
• Alignment project
  ...so be created from the command line using the command <tt>dvpr</tt> or <tt>dcp.new</tt> . You can get information on their syntax through >> help dcp.new
  5 KB (793 words) - 07:41, 27 October 2017
• Multireference alignment
  The [[dcp GUI]] gives you the option of just cloning a previously available table. The [[dcp GUI]] gives the option of using a template already available in the GUI and
  4 KB (592 words) - 20:58, 6 June 2018
• Walkthrough basic multireference
  <tt>dcp pmulti</tt>
  1 KB (221 words) - 11:06, 16 August 2016
• Multireference Analysis
  Multireference analysis is switched on on the [[dcp GUI]] when our project has more than one reference channels (i.e., it is a
  1 KB (215 words) - 08:37, 19 August 2020
• GPU
  === With the {{t|dcp}} GUI ===
  5 KB (902 words) - 06:44, 2 September 2016
• GPU identifiers
  In the [[dcp GUI]] go to the [[computing environment GUI]]. In the GPU panel there is an
  1 KB (214 words) - 09:17, 25 October 2017
• Alignment mask
  In order to to this from <tt>dcp</tt>, you need to go to Numerical Parameters, then switch on the "advanced"
  3 KB (431 words) - 12:29, 15 April 2016
• Walkthrough on adaptive bandpass filtering
  <tt>dcp;</tt> ...ualABPinput.png |thumb|center|800px| Bring the project to scope inside <tt>dcp</tt> ]]
  10 KB (1,461 words) - 18:12, 27 November 2017
• Data folder
  A correctly formated data folder is the minimal input that the [[dcp GUI]] needs in order to create an alignment project.
  4 KB (637 words) - 15:48, 30 September 2019
• GPUs Basel 2018
  <tt>dcp myProject</tt>
  4 KB (691 words) - 13:22, 27 August 2018
• Averaging of subtomograms
  ...rkers_average</tt> (shortform <tt>mwa</tt>), and can be modified also in [[dcp GUI]] (in the section of environment variables).
  5 KB (818 words) - 16:09, 6 December 2017
• GPUs Basel 2019
  <tt>dcp myProject</tt>
  4 KB (740 words) - 10:51, 27 August 2019
• Computers Basel 2017
  # <tt>dcp <project> </tt>
  5 KB (843 words) - 10:23, 25 August 2017
• Standalone
  .... For your own projects, you'll need to unfold them manually through the [[dcp GUI]] or with the command: <br /><tt>dvunfold ptest</tt><br /> invoked insi
  7 KB (1,143 words) - 13:56, 4 May 2018
• Dynamo Workshop at the International School of Crystallography 2019
  ...is '''not''' convenient to run projects directly pressing [Run] in the <tt>dcp</tt> GUI. It is a better approach to run the project in a different process
  7 KB (929 words) - 13:17, 5 June 2019
• Pipelines for Workshop Heidelberg 2018
  <tt>dcp</tt>
  7 KB (1,014 words) - 08:27, 22 August 2018
• EMBO workshop 2019
  ...is '''not''' convenient to run projects directly pressing [Run] in the <tt>dcp</tt> GUI. It is a better approach to run the project in a different process
  7 KB (944 words) - 09:26, 6 September 2019
• MPI Cluster
  After opening a project in the {{t|dcp GUI}}, switch to the {{t|Computing Environment}} GUI and:
  8 KB (1,287 words) - 11:09, 18 September 2017
• Starters guide
  ...initial reference and a table which you have already generated. Start a [[dcp GUI| WIZARD]] in the ''Dynamo'' command window or type <tt>>> dcp</tt>
  24 KB (3,775 words) - 14:39, 6 September 2021
• Walkthrough for lattices on vesicles (EMBO2023)
  <tt>dcp.new(pr,'d',df,'t','centered.tbl','template','centered.em','masks','default' Putting the 'show' flag to zero prevented the [[Dcp GUI | <tt>dcp</tt> GUI]] from popping up, as we want to use this walkthrough as an examp
  18 KB (3,069 words) - 12:21, 26 October 2023
• Walkthrough for lattices on vesicles
  <tt>dcp.new(pr,'d',df,'t','centered.tbl','template','centered.em','masks','default' Putting the 'show' flag to zero prevented the [[Dcp GUI | <tt>dcp</tt> GUI]] from popping up, as we want to use this walkthrough as an examp
  18 KB (3,099 words) - 12:19, 18 August 2021
• Walkthrough for lattices on vesicles (Copenhagen 2024)
  <tt>dcp.new(pr,'d',df,'t','centered.tbl','template','centered.em','masks','default' Putting the 'show' flag to zero prevented the [[Dcp GUI | <tt>dcp</tt> GUI]] from popping up, as we want to use this walkthrough as an examp
  18 KB (3,070 words) - 15:42, 22 January 2024
• Table
  ...lotting options of <tt>dtplot</tt>. This GUI is one of options that the [[dcp GUI]] offers when exploring the results of an alignment through browsing th
  8 KB (1,191 words) - 07:50, 1 June 2017
• EMBO workshop 2020
  To set up a project for GPU computing in the dcp GUI, set the following parameters under ''computing environment''
  9 KB (1,391 words) - 14:19, 25 August 2020
• Starters guide (EMBO2021)
  <tt> dcp</tt>
  15 KB (2,422 words) - 14:17, 13 September 2021
• Starters guide (EMBO2023)
  <tt> dcp</tt>
  15 KB (2,422 words) - 14:56, 8 September 2023
• Starters guide (Copenhagen 2024)
  <tt> dcp</tt>
  15 KB (2,427 words) - 12:26, 25 January 2024
• Starters guide (workshop version)
  <tt> dcp</tt>
  15 KB (2,427 words) - 17:27, 3 September 2021
• Starters guide (Göttingen 2024)
  <tt> dcp</tt>
  15 KB (2,427 words) - 11:19, 8 April 2024
• Starters guide (SciLifeLab 2023)
  <tt> dcp</tt>
  15 KB (2,424 words) - 14:17, 25 October 2023
• HIV1 Walkthrough (PSI 2023)
  '''If the reader is already familiar with <code>dcp</code>, they may choose to skip ahead to the next section.''' ...h to give its name (a string) to <code>dcp.new</code> (for instance, <code>dcp.new(theNameOfMyProject)</code>).
  94 KB (15,184 words) - 12:28, 6 March 2024
• High Resolution workflow for HIV1 (SciLifeLab 2023)
  '''If the reader is already familiar with <code>dcp</code>, they may choose to skip ahead to the next section.''' ...h to give its name (a string) to <code>dcp.new</code> (for instance, <code>dcp.new(theNameOfMyProject)</code>).
  94 KB (15,184 words) - 12:26, 6 March 2024
• Compact HIV1 walkthrough (PSI 2023)
  '''If the reader is already familiar with <code>dcp</code>, they may choose to skip ahead to the next section.''' ...h to give its name (a string) to <code>dcp.new</code> (for instance, <code>dcp.new(theNameOfMyProject)</code>).
  95 KB (15,390 words) - 12:29, 6 March 2024
• HIV1 workshop
  '''If the reader is already familiar with <code>dcp</code>, they may choose to skip ahead to the next section.''' ...h to give its name (a string) to <code>dcp.new</code> (for instance, <code>dcp.new(theNameOfMyProject)</code>).
  99 KB (15,898 words) - 12:27, 6 March 2024
• High resolution walkthrough with HIV1 (Göttingen 2024)
  '''If the reader is already familiar with <code>dcp</code>, they may choose to skip ahead to the next section.''' ...h to give its name (a string) to <code>dcp.new</code> (for instance, <code>dcp.new(theNameOfMyProject)</code>).
  104 KB (16,757 words) - 11:17, 8 April 2024
• High resolution walkthrough with HIV1
  '''If the reader is already familiar with <code>dcp</code>, they may choose to skip ahead to the next section.''' ...h to give its name (a string) to <code>dcp.new</code> (for instance, <code>dcp.new(theNameOfMyProject)</code>).
  104 KB (16,788 words) - 07:59, 13 May 2024