Difference between revisions of "PSI Workshop 2023"
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Revision as of 19:42, 31 July 2023
Workshop
The PSI Dynamo workshop will take place from August the 16th to August the 18th in the Paul Scherrer Institute.
The workshop provides hands-on training in all practical aspects of tomography and sub-tomogram averaging using our software Dynamo, encompassing all stages of the pipeline: alignment and reconstruction of tilt series, tomogram visualization and archiving, particle selection and extraction, and subtomogram alignment, averaging, refinement and classification. No previous experience is required. Computing infrastructure will be provided in place, and we welcome participants to bring their own data sets to work on them during this four-day course.
Computing resources
Access
We will publish here a brief guide describing the steps to follow to access the computing resources.
Contents
| Module | Time | Subject |
|---|---|---|
| 1 | 40 min | General Introduction |
| 2 | 80 min | Starters Guide: subtomogram averaging |
| 3 | 20 min | General modelling |
| 3a | 20 min | Models: Filaments |
| 3b | 20 min | Models: Vesicles |
| 3c | 20 min | Models: Surfaces |
| Module | Time | Subject |
|---|---|---|
| 4 | Example | Template Matching |
| 5 | Example | Principal Component Analysis |
| 6a | Example | Alignment of tilt series: Manual |
| 6b | Example | Alignment of tilt series: GUI |
| 6c | Example | Alignment of tilt series: command line |
| 7 | Example | Advanced Starters Guide |
