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- Volume list files are text files with extension {{t|.vll}}. They are used as an easy i A volume list file just lists tomogram files, letting the user attach under each line rep6 KB (906 words) - 14:24, 10 April 2020
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- ...xisting catalogue, the GUI consists in a table that lists each catalogued volume as a row. In general, you need to click on ''list volumes'' to refresh this table area if you change some property of the cat2 KB (285 words) - 15:42, 21 March 2016
- Volume list files are text files with extension {{t|.vll}}. They are used as an easy i A volume list file just lists tomogram files, letting the user attach under each line rep6 KB (906 words) - 14:24, 10 April 2020
- === Volume table index === The [[volume table index file]] is generated when several tomograms have been used. It i7 KB (1,221 words) - 14:46, 24 April 2018
- where {{t|myvll}} is a [[volume list file]], in this case a text file with the names of the files626 bytes (93 words) - 12:21, 1 September 2016
- ...trough the <tt>dcm</tt> command. Type <tt>help dcm</tt> for an exhaustive list. ...button. If these functionalities are invoked through the GUI, however, the list in the GUI will update automatically.5 KB (855 words) - 20:28, 14 August 2017
- ...number of assigned models doesn't change, refresh the GUI pressing the {{t|list volumes}} button.3 KB (419 words) - 09:51, 12 March 2020
- === On a single volume === Cropping particles from a single volume is5 KB (787 words) - 12:49, 23 May 2018
- If we open the tomogram with the volume list manager, we will get a list of those models. We should see that the first we created does contain some4 KB (574 words) - 04:54, 17 August 2016
- % creates a table for each model in a list of membrane models * <tt>-i * </tt> : visit all (<tt>*</tt>) volume indices (<tt>-i</tt>). This is optional.6 KB (1,039 words) - 15:09, 23 February 2017
- * <tt>.tags:</tt> <br /> list of tags that did actually contribute to the averaging procedure. This is Note that the volume <tt>rotatedParticle</tt> will contain some NaN (not-a-number) values, as ex5 KB (792 words) - 13:09, 13 October 2017
- ...e raw average, each missing wedge is rotated and added into a volume. This volume has the size of a particle if Fourier space. It is called an {{t|fweight}} T.B.I. The user can provide a ''generic data folder'' as just a list of tomograms and coordinates. This way, ''Dynamo''will crop on the fly the4 KB (582 words) - 10:06, 21 November 2017
- ...which should have been geneerated in the workspace. We use it to create a list with the names of the binned tomograms with some easy string handling; we j To create the new catalogue, we need a text file which just a list of filenames:8 KB (1,292 words) - 16:50, 6 February 2020
- ...model is generated from scratch in the workspace, you need to add it to a volume [[Adding models to catalogued volumes|explicitly]]. : will list all the models in all volumes in the catalogue (as a cell array of files i10 KB (1,574 words) - 09:00, 2 May 2017
- <tt>dapropos table</tt> will give you a list of basic commands that you can use for table manipulation. ...The same table can be used for several volumes when used jointly with a [[volume-table mapping file]].8 KB (1,191 words) - 07:50, 1 June 2017
- ...s, you can add tomograms to the catalogue by ''Catalogue -> Browse for new volume''. The tomograms are situated in the directory <tt>testCatalogue</tt>. They Select the first tomogram in the list and go to ''View volume>Full tomogram file in tomoslice''.15 KB (2,422 words) - 14:56, 8 September 2023
- ...s, you can add tomograms to the catalogue by ''Catalogue -> Browse for new volume''. The tomograms are situated in the directory <tt>testCatalogue</tt>. They Select the first tomogram in the list and go to ''View volume>Full tomogram file in tomoslice''.15 KB (2,422 words) - 14:17, 13 September 2021
- ...s, you can add tomograms to the catalogue by ''Catalogue -> Browse for new volume''. The tomograms are situated in the directory <tt>testCatalogue</tt>. They Select the first tomogram in the list and go to ''View volume>Full tomogram file in tomoslice''.15 KB (2,427 words) - 17:27, 3 September 2021
- ...s, you can add tomograms to the catalogue by ''Catalogue -> Browse for new volume''. The tomograms are situated in the directory <tt>testCatalogue</tt>. They Select the first tomogram in the list and go to ''View volume>Full tomogram file in tomoslice''.15 KB (2,427 words) - 11:19, 8 April 2024
- ...s, you can add tomograms to the catalogue by ''Catalogue -> Browse for new volume''. The tomograms are situated in the directory <tt>testCatalogue</tt>. They Select the first tomogram in the list and go to ''View volume>Full tomogram file in tomoslice''.15 KB (2,427 words) - 12:26, 25 January 2024
- ...s, you can add tomograms to the catalogue by ''Catalogue -> Browse for new volume''. The tomograms are situated in the directory <tt>testCatalogue</tt>. They Select the first tomogram in the list and go to ''View volume>Full tomogram file in tomoslice''.15 KB (2,424 words) - 14:17, 25 October 2023
- ...ogue -> Input list of tomograms -> Browse for text file (.vll file)''. The volume file should be created beforehand by opening a blank text file named for ex ...e catalogue manager and then go under ''View volume -> Load full prebinned Volume [if available] -> open in tomoslice''. If needed, adjust the lowpass level22 KB (3,572 words) - 12:13, 18 August 2021
- ...ogue -> Input list of tomograms -> Browse for text file (.vll file)''. The volume file should be created beforehand by opening a blank text file named for ex ...e catalogue manager and then go under ''View volume -> Load full prebinned Volume [if available] -> open in tomoslice''. If needed, adjust the lowpass level22 KB (3,560 words) - 15:37, 22 January 2024
- ...ogue -> Input list of tomograms -> Browse for text file (.vll file)''. The volume file should be created beforehand by opening a blank text file named for ex ...e catalogue manager and then go under ''View volume -> Load full prebinned Volume [if available] -> open in tomoslice''. If needed, adjust the lowpass level22 KB (3,583 words) - 16:27, 8 September 2023
- to list into the screen your available tomograms, each with its absolute path. <tt>ls -d <repository>/data/b*/ts*/imod/*Full.rec >> list.vll </tt>8 KB (1,277 words) - 17:14, 16 May 2017
- ...tential entries for the subject. You can use it without parameters get the list of topics or ask about a particular topic like >> dapropos table. More adva ...]. You can add tomograms to the catalogue by ''Catalogue -> Browse for new volume''. You can get an overview of your tomograms in the catalogue by ''View all24 KB (3,775 words) - 14:39, 6 September 2021
- Here we list the significance of each column in a [[table]]. Each row represents a singl ...dicated to have a custom mask, then the [[data folder]] needs to include a volume file with zeros and ones that describes this custom geometry.5 KB (721 words) - 17:41, 8 March 2018
- <nowiki>filetype: volume The flag <tt>-l</tt> asks ''Dynamo'' to list items of a given category of catalogue contents, in this case <tt>tomograms46 KB (7,267 words) - 10:09, 13 September 2021
- <nowiki>filetype: volume The flag <tt>-l</tt> asks ''Dynamo'' to list items of a given category of catalogue contents, in this case <tt>tomograms46 KB (7,267 words) - 14:58, 8 September 2023
- <nowiki>filetype: volume The flag <tt>-l</tt> asks ''Dynamo'' to list items of a given category of catalogue contents, in this case <tt>tomograms46 KB (7,370 words) - 11:53, 20 October 2023
- <nowiki>filetype: volume The flag <tt>-l</tt> asks ''Dynamo'' to list items of a given category of catalogue contents, in this case <tt>tomograms46 KB (7,389 words) - 06:30, 16 August 2023
- <nowiki>filetype: volume The flag <tt>-l</tt> asks ''Dynamo'' to list items of a given category of catalogue contents, in this case <tt>tomograms46 KB (7,369 words) - 11:20, 8 April 2024
- <nowiki>filetype: volume The flag <tt>-l</tt> asks ''Dynamo'' to list items of a given category of catalogue contents, in this case <tt>tomograms46 KB (7,369 words) - 16:45, 22 January 2024
- <nowiki>filetype: volume The flag <tt>-l</tt> asks ''Dynamo'' to list items of a given category of catalogue contents, in this case <tt>tomograms47 KB (7,440 words) - 16:36, 15 August 2023
- <nowiki>filetype: volume The flag <tt>-l</tt> asks ''Dynamo'' to list items of a given category of catalogue contents, in this case <tt>tomograms37 KB (5,792 words) - 18:30, 2 September 2019
- ...a catalogue that will contain all the annotations that we perform on this volume (through the opened <tt>dtmslice</tt> session) ...t>dvput</tt>, which is used to change one or several project parameters. A list of the parameters and their syntax can be printed with <tt>dvhelp</tt> or c18 KB (3,069 words) - 12:21, 26 October 2023
- ...a catalogue that will contain all the annotations that we perform on this volume (through the opened <tt>dtmslice</tt> session) ...t>dvput</tt>, which is used to change one or several project parameters. A list of the parameters and their syntax can be printed with <tt>dvhelp</tt> or c18 KB (3,099 words) - 12:19, 18 August 2021
- ...a catalogue that will contain all the annotations that we perform on this volume (through the opened <tt>dtmslice</tt> session) ...t>dvput</tt>, which is used to change one or several project parameters. A list of the parameters and their syntax can be printed with <tt>dvhelp</tt> or c18 KB (3,070 words) - 15:42, 22 January 2024
- ...ution. This process is known as particle picking (sometimes referred to as volume annotation). ...ative, it is recommended to use absolute paths) to the tomograms and their volume ID needs should also be stored in the catalogue folder. That is, exactly th94 KB (15,184 words) - 12:26, 6 March 2024
- ...ution. This process is known as particle picking (sometimes referred to as volume annotation). ...ative, it is recommended to use absolute paths) to the tomograms and their volume ID needs should also be stored in the catalogue folder. That is, exactly th94 KB (15,184 words) - 12:28, 6 March 2024
- ...ution. This process is known as particle picking (sometimes referred to as volume annotation). ...ative, it is recommended to use absolute paths) to the tomograms and their volume ID needs should also be stored in the catalogue folder. That is, exactly th95 KB (15,390 words) - 12:29, 6 March 2024
- ...ution. This process is known as particle picking (sometimes referred to as volume annotation). ...ative, it is recommended to use absolute paths) to the tomograms and their volume ID needs should also be stored in the catalogue folder. That is, exactly th99 KB (15,898 words) - 12:27, 6 March 2024
- ...ution. This process is known as particle picking (sometimes referred to as volume annotation). ...ative, it is recommended to use absolute paths) to the tomograms and their volume ID needs should also be stored in the catalogue folder. That is, exactly th104 KB (16,757 words) - 11:17, 8 April 2024
- ...ution. This process is known as particle picking (sometimes referred to as volume annotation). ...ative, it is recommended to use absolute paths) to the tomograms and their volume ID needs should also be stored in the catalogue folder. That is, exactly th104 KB (16,788 words) - 07:59, 13 May 2024
