Search results

Create the page "Alignment" on this wiki! See also the search results found.

• Practical Suggestions for Tomographic Reconstruction
  === Tilt series alignment === ...rations_for_tilt_series_alignment_in_IMOD | considerations for tilt series alignment]] with [https://bio3d.colorado.edu/imod/ IMOD].
  5 KB (871 words) - 13:59, 30 April 2019
• PSI Workshop 2023
  ...lization and archiving, particle selection and extraction, and subtomogram alignment, averaging, refinement and classification. No previous experience is requir | 6a || 11:30 - 12:00 || [[Walkthrough on manual marker clicking | Alignment of tilt series: Manual]]
  5 KB (685 words) - 06:55, 6 October 2023
• SciLife Lab Workshop for Subtomogram Averaging 2023
  ...o</it> implements to tackle them. We will thus discuss different tools for alignment of tilt series, creation of tomograms, location of particles and design of | [[Walkthrough_on_GUI_based_tilt_series_alignment_(EMBO2021)| Tilt series alignment with GUI]]
  4 KB (501 words) - 14:32, 19 October 2023
• Getting started
  ...g]] tomograms, [[Particle extraction|extracting particles]], [[Subtomogram alignment|aligning]], averaging and [[Classification|classifying]] subtomograms, and
  932 bytes (117 words) - 12:08, 16 August 2023
• Cross correlation matrix
  #: alignment parameters A_i and A_j ...mal input is a set of particles (formatted as a [[data folder]]) and their alignment parameters (formatted as a [[table]]). You also may want to specify a class
  3 KB (471 words) - 10:16, 19 April 2016
• Materials Basel 2017
  ...oductionAlignmentProjects.pdf tutorial on] the basic concept in ''Dynamo'' alignment: the ''project''. * Some tools for tilt series alignment, reconstruction, CTF correction.
  4 KB (538 words) - 07:58, 25 August 2017
• Pipelines for Workshop Heidelberg 2018
  * Alignment of tilt series with ''Dynamo'' * Independent alignment and resolution determination.
  7 KB (1,014 words) - 08:27, 22 August 2018
• Computing environments
  ...on of tomograms]], and a dedicated computing system (GPUs or clusters) for alignment projects (where the most intensive number crunching occurs) During the alignment stage, [[data folder|cropped particles]] are stored in disk and read into
  2 KB (397 words) - 07:43, 29 April 2016
• Copenhagen Workshop on Cryo Electron Tomography 2024
  ...lization and archiving, particle selection and extraction, and subtomogram alignment, averaging, refinement and classification. No previous experience is requir | Alignment of tilt series || https://drive.google.com/drive/folders/1VPYk91xJ6cLCSy6Mg
  8 KB (1,029 words) - 14:32, 7 February 2024
• Daverage
  ...sic command line option for averaging particles in a [[data folder]] using alignment parameters expresed inside a [[table]]. Particles and shifted, then rotated, following the alignment parameters in the table. By convention, positions 4:6 and 7:9 in a the <tt
  5 KB (792 words) - 13:09, 13 October 2017
• Materials Basel 2016
  ...oductionAlignmentProjects.pdf tutorial on] the basic concept in ''Dynamo'' alignment: the ''project''. * Manual alignment.
  3 KB (413 words) - 09:12, 19 August 2016
• EMBO workshop 2016
  ...oductionAlignmentProjects.pdf tutorial on] the basic concept in ''Dynamo'' alignment: the ''project''. * Manual alignment.
  3 KB (404 words) - 15:51, 31 August 2016
• Dynamo Workshop CIC bioGUNE 2020
  ...lization and archiving, particle selection and extraction, and subtomogram alignment, averaging, refinement and classification. No previous experience is requir * Alignment and reconstruction of tilt series.
  4 KB (570 words) - 16:01, 11 August 2020
• EMBO workshop 2023
  | [[Walkthrough on manual marker clicking (EMBO2023) | Alignment of tilt series: Manual]] | [[Walkthrough on GUI based tilt series alignment (EMBO2023)| Tilt series alignment with GUI]]
  5 KB (748 words) - 12:28, 10 September 2023
• Göttingen Workshop 2024
  ...lization and archiving, particle selection and extraction, and subtomogram alignment, averaging, refinement and classification. No previous experience is requir | Alignment of tilt series || https://drive.google.com/drive/folders/1VPYk91xJ6cLCSy6Mg
  7 KB (1,016 words) - 14:01, 12 April 2024
• Workshop exercises
  == Alignment ==
  4 KB (698 words) - 08:30, 1 September 2016
• SciLifeLab Workshop for Cryo Electron Tomography Processing
  ...lization and archiving, particle selection and extraction, and subtomogram alignment, averaging, refinement and classification. No previous experience is requir ...1:45 - 12:30 || [[Walkthrough on manual marker clicking (SciLifeLab 2023)| Alignment of tilt series: Manual]]
  6 KB (807 words) - 06:47, 27 October 2023
• Basel Workshop 2019
  ...lization and archiving, particle selection and extraction, and subtomogram alignment, averaging, refinement and classification. No previous experience is requir * Alignment and reconstruction of tilt series.
  4 KB (662 words) - 10:07, 12 October 2021
• Fourier mask on template
  The Fourier Mask that you define on a template during an alignment project describes the Fourier content of the template, ''not'' the one of t
  1 KB (204 words) - 08:25, 6 July 2017
• Basel Dynamo Workshop 2018
  ...lization and archiving, particle selection and extraction, and subtomogram alignment, averaging, refinement and classification. No previous experience is requir * Alignment and reconstruction of tilt series.
  5 KB (673 words) - 13:26, 27 August 2018

View (previous 20 | next 20) (20 | 50 | 100 | 250 | 500)