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- Also, the scripts contain the numerical parameters needed to run the corresponding executable. If you need to edit them, you s The parameters defined in <tt>emboAlignment</tt> concern mainly the size of the gold bead.7 KB (1,014 words) - 08:27, 22 August 2018
- ...table. However, it might be useful in order to interprete the results of a project, to check if a table has been correctly generated/imported or to diagnose p ...der]] that you don't want to included into the alignment or classification project. Of course, you can just a table that does not include the particles you wa6 KB (809 words) - 07:22, 25 November 2019
- Clicking in the menu on ''Projection -> project full shown fragment along z'' (still in dtmslice) and you will get a screen ...e and a table. All of these files we generated before. Start the alignment project GUI by typing15 KB (2,427 words) - 12:26, 25 January 2024
- Clicking in the menu on ''Projection -> project full shown fragment along z'' (still in dtmslice) and you will get a screen ...e and a table. All of these files we generated before. Start the alignment project GUI by typing15 KB (2,427 words) - 17:27, 3 September 2021
- Clicking in the menu on ''Projection -> project full shown fragment along z'' (still in dtmslice) and you will get a screen ...e and a table. All of these files we generated before. Start the alignment project GUI by typing15 KB (2,427 words) - 11:19, 8 April 2024
- ...gned by the system to each device, which you need to enter in a ''Dynamo'' project through the parameter {{t|gpu_identifier_set}} ==Using the GPU in an alignment project==5 KB (902 words) - 06:44, 2 September 2016
- Clicking in the menu on ''Projection -> project full shown fragment along z'' (still in dtmslice) and you will get a screen ...erated before. You can close all the previous GUIs and start the alignment project GUI by typing15 KB (2,422 words) - 14:56, 8 September 2023
- Clicking in the menu on ''Projection -> project full shown fragment along z'' (still in dtmslice) and you will get a screen ...erated before. You can close all the previous GUIs and start the alignment project GUI by typing15 KB (2,422 words) - 14:17, 13 September 2021
- Clicking in the menu on ''Projection -> project full shown fragment along z'' (still in dtmslice) and you will get a screen ...erated before. You can close all the previous GUIs and start the alignment project GUI by typing15 KB (2,424 words) - 14:17, 25 October 2023
- Then the ''compensated average'' (called simply {{t|average}} inside a project) gets computed by dividing the raw average in fourier space with the comput ...he same particle cropped with a bigger sidelength. During execution of the project, the small particle will be used for alignment (to save time), and the ''co4 KB (582 words) - 10:06, 21 November 2017
- ...he list of shipped pdf tutorials and check the syntax of commands, project parameters or database elements.2 KB (388 words) - 13:35, 20 May 2016
- ...d line option for averaging particles in a [[data folder]] using alignment parameters expresed inside a [[table]]. ...<tt>i</tt>-th row in a table denote respectively the shifts and rotation parameters that are performed on the template to match the particle in that <tt>i</tt5 KB (792 words) - 13:09, 13 October 2017
- ...ts and their orientations (when visualizing actual results of an alignment project use option '' 'corrected_oriented_positions'' ' instead of the one shown he ...ill use this average as a first reference (template) in the next alignment project. We therefore save the average with22 KB (3,572 words) - 12:13, 18 August 2021
- ...ts and their orientations (when visualizing actual results of an alignment project use option '' 'corrected_oriented_positions'' ' instead of the one shown he ...ill use this average as a first reference (template) in the next alignment project. We therefore save the average with22 KB (3,560 words) - 15:37, 22 January 2024
- ...ts and their orientations (when visualizing actual results of an alignment project use option '' 'corrected_oriented_positions'' ' instead of the one shown he ...ill use this average as a first reference (template) in the next alignment project. We therefore save the average with22 KB (3,583 words) - 16:27, 8 September 2023
- This file can be used as input for <tt>average</tt> or an alignment project. You can use a <tt>table</tt> flag in order to pass a table. ...icles, and a table to refer them. This table contains the actual alignment parameters of the particles in the respective data folder.7 KB (1,151 words) - 12:30, 6 February 2023
- In whichever way you control the classification project, operatively a PCA based classification will require the completion of thes Additionally, there are some fine tuning parameters that can be passed: particles can be symmetrized, resized or bandpassed.3 KB (424 words) - 17:03, 28 March 2020
- ...Projects.pdf tutorial on] the basic concept in ''Dynamo'' alignment: the ''project''. ...uide | walkthrough]]: creating a catalogue, picking particles, launching a project.9 KB (1,391 words) - 14:19, 25 August 2020
- ...ther 64. The particle subtomogram are randomly oriented, but the alignment parameters are known. == Mathematical parameters ==13 KB (1,933 words) - 12:36, 10 September 2023
- ...plate for the full crown. Examples below are given assuming that your best project was named <tt>localized</tt>, substitute if not. Recover the last computed refined table in the data base of your project13 KB (2,062 words) - 10:46, 29 November 2017
