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• Projects on the command line
  creates an empty project in disk. All the files and folders it points to (masks, data, etc) are just You can also indicate some file parameters while creating the project:
  690 bytes (108 words) - 08:46, 23 May 2016
• Dcp GUI
  ...mo Current Project) is the main tool for interactive design of [[Alignment project| projects]]. ...le and linked to a project, or simply be created during the design of the project using tools indicated by the GUI.
  3 KB (503 words) - 21:57, 13 September 2017
• Project parameter systemNoMPIWrapUnfoldingGPU
  [[Category:project parameters]] [[Category:Advanced project parameters]]
  1 KB (253 words) - 14:57, 22 September 2016
• Adaptive bandpass filtering
  Operationally, an ABP project is just a multireference project that: * and that adjust the lowpass filter parameters at each iteration.
  4 KB (666 words) - 07:10, 28 November 2017
• Angular search
  ...ular grid (i.e., a set of Euler triplets to be scanned) is defined by five parameters: The first four are project parameters that can be chosen by the user and will be applied for the analysis of all
  3 KB (432 words) - 07:56, 2 May 2016
• Alignment project
  [[Category: Alignment Project]] The alignment project is one of the most important objects in Dynamo
  5 KB (793 words) - 07:41, 27 October 2017
• Shift limits
  The shift limiting policy is governed by two parameters: the extent of the allowed limit itself (<tt>area_search</tt> or <tt>lim</t = Changing the shift limits in a project=
  1 KB (245 words) - 08:13, 26 October 2016
• Tarring projects
  Tarring projects is the technique of compacting all information in a project in a single file (called ''tarball''). This file can be then copied to a di * You ran a project in a remote machine where graphical operations are slow, and want to examin
  3 KB (511 words) - 15:47, 6 November 2017
• Refined table
  * columns 4-9 (the alignment parameters) The {{t|ddb}} command provides easy access to the results of the project. Here some examples of syntax
  2 KB (304 words) - 09:15, 22 April 2016
• Multilevel refinement
  ...that produce the maximum correlation in a multilevel fashion. The project parameters <tt>cone_range</tt>, <tt>cone_sampling</tt>, <tt>inplane_range</tt> and <tt In Dynamo, an angular grid is defined by five parameters:
  5 KB (786 words) - 08:35, 27 October 2017
• Scripted creation of a project in the Linux command line
  Here we show how to create from scratch a project. This assumes that you already have a [[data folder]], a [[table]],a templ ...for data, etc, which we can use now to show how they can be linked into a project.
  2 KB (400 words) - 09:05, 22 September 2016
• Averaging of subtomograms
  Averaging of subtomograms means applying an available set of alignment parameters onto a set of data particles and adding them together. Because of the miss ...sion with the <tt>'fweight'</tt>. Note that with the default values of the parameters, this step is ''not'' operated.
  5 KB (818 words) - 16:09, 6 December 2017
• Walkthrough on adaptive bandpass filtering
  == Creating an ABP project with the GUI== ...auxiliary single reference project and then deriving the corresponding ABP project.
  10 KB (1,463 words) - 12:54, 2 December 2024
• MPI Cluster
  ...time you create a project, tell it to use the cluster header to produce a project execution script (extension <tt>.sh</tt>) # Submit the execution script representing the project to your cluster.
  8 KB (1,287 words) - 11:09, 18 September 2017
• Postprocessing plugins
  ...efine an action that ''Dynamo'' will execute after each iteration during a project alignment. * [Medium] Resolution dependent scanning of angular scan parameters.
  7 KB (1,043 words) - 17:07, 9 March 2017
• Multireference alignment
  In a multireference alignment [MRA] project, each particle will be aligned against R different templates. ...an define ''alignment'' masks and ''classification'' masks separately in a project is specially useful when running MRA projects. Very frequently, you want to
  4 KB (592 words) - 20:58, 6 June 2018
• Particle picking
  Sometimes, models carry parameters that need to be tuned for your case (for instance, the radius of [[filament ...[data folder]] that can be used to design an [[alignment project|alignment project]]
  2 KB (340 words) - 11:31, 23 February 2017
• Computers Basel 2017
  # Create alignment project >> computational parameters >> system_gpu # <tt>scp <project.tar> course##@ela.cscs.ch:~/ </tt>
  5 KB (843 words) - 10:23, 25 August 2017
• Alignment mask
  [[Category:alignment project]] In order to to this from <tt>dcp</tt>, you need to go to Numerical Parameters, then switch on the "advanced" button, make sure that the Cross Correlatio
  3 KB (431 words) - 12:29, 15 April 2016
• Hints for improving a refinement
  ...ual resolution and check that your filters ({{t|lowpass}} parameter in the project) are not too coarse in relation to the actual resolution of your average. ...ification mask the ''alignment'' mask that was used by your last alignment project.
  5 KB (720 words) - 13:53, 19 May 2016

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