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• Particle picking
  ...vesicles, pseudo-crystals or freely-shaped membranes. For each different geometry type, ''Dynamo'' provides a different [[Model|model]] class. ...in the catalogue, and would define in them one or models that capture the geometry of the particle distribution. The models will be also kept in the catalogue
  2 KB (340 words) - 11:31, 23 February 2017
• Downloads
  ...ion). It will work only under Matlab. It includes our latest module for '''Geometry aware Template Matching" New system for Geometry aware Template matching.
  4 KB (675 words) - 07:20, 1 March 2025
• Table column convention
  ...Fourier space covered by the particle. Basically it represents the imaging geometry. ...ds to include a volume file with zeros and ones that describes this custom geometry.
  5 KB (721 words) - 17:41, 8 March 2018
• Multilevel refinement
  ...re considered and a new set of angles to scan is defined around these. The geometry of the new set is defined by the angular parameters of the previous level w would generate this scanning geometry:
  5 KB (786 words) - 08:35, 27 October 2017
• Model
  Once the initial points that describe the geometry of interest have been introduces, the user can choose for different paramet ...uperclass of type {{t|model}}, and the class will depend on the particular geometry.
  10 KB (1,574 words) - 09:00, 2 May 2017
• Filament types code example
  This code exemplifies the geometry and syntax of different [[Filament model#Types_of_filaments| filament types
  3 KB (325 words) - 14:29, 15 August 2016
• Walkthrough on membrane models
  ...l points using the ''model workflow'' to generate a user specific cropping geometry. Open the workflow: ...out different parameters until you have the coverage that fits your sample geometry. While setting those parameters, also always keep in mind the subtomogram b
  7 KB (1,176 words) - 12:43, 2 December 2024
• EMBO workshop 2018
  ...tices on vesicles]] extraction of particles from densely packed spherical geometry.
  3 KB (399 words) - 13:17, 2 December 2024
• Indicating the missing wedge
  ...assume a <tt>ftype</tt> 1 (i.e., column 13 of table will be one). In this geometry, electrons come from the direction z, and the sampled rotated around the 'y
  3 KB (548 words) - 10:41, 3 April 2020
• Materials Basel 2017
  ...les [[Walkthrough for lattices on vesicles| from densely packed spherical geometry ]] (~1 hour) <br /> To get the data, please write in the '''linux terminal
  4 KB (540 words) - 13:16, 2 December 2024
• Materials Basel 2018
  ...les [[Walkthrough for lattices on vesicles| from densely packed spherical geometry ]] (~1 hour) <br /> To get the data, please write in the '''linux terminal
  4 KB (606 words) - 13:17, 2 December 2024
• Membrane models
  ...veral z-slices of a tomogram. Through the workflow specific for this model geometry, ''Dynamo'' will create a smooth continuous surface that represents the mem
  5 KB (792 words) - 10:18, 28 February 2017
• Materials Basel 2019
  ...les [[Walkthrough for lattices on vesicles| from densely packed spherical geometry ]] (~1 hour) <br /> To get the data, please write in the '''linux terminal
  5 KB (700 words) - 13:17, 2 December 2024
• Volume center
  [[Category: Geometry]]
  6 KB (936 words) - 09:01, 5 March 2018
• Tilt series alignment workflow folder
  ...ersions of micrographs. They do not include any 3D model of the projection geometry, and are used internally by ''Dynamo'' to provide an initial track identit
  6 KB (945 words) - 16:06, 6 February 2019
• Walkthrough on filament models
  ...l points using the ''model workflow'' to generate a user specific cropping geometry. Open the workflow:
  6 KB (1,044 words) - 12:42, 2 December 2024
• Walkthrough on vesicle models
  ...model points using the model workflow to generate a user specific cropping geometry. Open the workflow:
  5 KB (856 words) - 12:42, 2 December 2024
• Walkthrough on localized reconstruction
  ...ssed in the coordinates of the 3x binned reconstruction. You can check the geometry with low level depicting commands as <tt>dslice3d</tt> Now we can proceed to transport the locations annotated in the 3x binned geometry into the full size information.
  18 KB (2,787 words) - 12:48, 3 December 2024
• Prato Workshop 2019
  ...les [[Walkthrough for lattices on vesicles| from densely packed spherical geometry on HIV viral capsides]] (~1 hour)
  6 KB (796 words) - 13:19, 2 December 2024
• Diamond Workshop 2017
  ...les [[Walkthrough for lattices on vesicles| from densely packed spherical geometry on HIV viral capsides]] (~1 hour)
  6 KB (847 words) - 13:19, 2 December 2024

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