User contributions for AlmaVivas

20 October 2023

• 08:2908:29, 20 October 2023 diff hist 0 N File:Fhv environment.png No edit summary current
• 08:2908:29, 20 October 2023 diff hist 0 Complete walkthrough on FHV virus (SciLifeLab 2023) →Project to find membrane orientations
• 08:2808:28, 20 October 2023 diff hist +60 Complete walkthrough on FHV virus (SciLifeLab 2023) →Project to find membrane orientations
• 08:1608:16, 20 October 2023 diff hist +47,382 N Complete walkthrough on FHV virus (SciLifeLab 2023) Created page with "Category:Walkthroughs This walkthrough uses a small size example based on a real tomogram to cover several tasks. == The example data set == The data is a fraction of a..."
• 08:1508:15, 20 October 2023 diff hist +10 SciLifeLab Workshop for Cryo Electron Tomography Processing →Time Schedule
• 08:1108:11, 20 October 2023 diff hist +5,485 N Walkthrough on command line based tilt series alignment (SciLifeLab 2023) Created page with "This last tutorial on tilt series alignment is command line based. When woking under high data regimes, it is, perhaps, the most attractive option. = Create the workflow =..."
• 08:1008:10, 20 October 2023 diff hist +7 Walkthrough on GUI based tilt series alignment (SciLifeLab 2023) No edit summary
• 08:0908:09, 20 October 2023 diff hist +17 Walkthrough on manual marker clicking (SciLifeLab 2023) →Data set
• 08:0808:08, 20 October 2023 diff hist −17 Walkthrough on manual marker clicking (SciLifeLab 2023) →Data set
• 08:0808:08, 20 October 2023 diff hist −33 Walkthrough on GUI based tilt series alignment (SciLifeLab 2023) →Data
• 08:0708:07, 20 October 2023 diff hist +16 Walkthrough for template matching (SciLifeLab 2023) →Getting the tomogram
• 08:0508:05, 20 October 2023 diff hist +21,016 N Walkthrough on GUI based tilt series alignment (SciLifeLab 2023) Created page with "This walkthrough guides users through a series of steps on how to use it in GUI-based mode. = Data = Here we will be using the same data as in the Walkthrough on manual m..."
• 08:0408:04, 20 October 2023 diff hist +2 Walkthrough on manual marker clicking (SciLifeLab 2023) →Binned reconstruction
• 08:0308:03, 20 October 2023 diff hist −2 Walkthrough on manual marker clicking (SciLifeLab 2023) →Binned reconstruction
• 08:0308:03, 20 October 2023 diff hist +9,755 N Walkthrough on manual marker clicking (SciLifeLab 2023) Created page with "This walkthrough describes the tools to ''manually'' locate fiducial markers for tilt series alignment using different graphical tools. '''Note''' : the reader should be awa..."
• 08:0108:01, 20 October 2023 diff hist −5 Walkthrough for template matching (SciLifeLab 2023) →Getting the tomogram
• 07:5607:56, 20 October 2023 diff hist +14,081 N Walkthrough on PCA through the command line (SciLifeLab 2023) Created page with "PCA computations through the command line are governed through ''PCA workflow'' objects. We describe here how to create and handle them: = Cr..."
• 07:5407:54, 20 October 2023 diff hist +26,199 N Walkthrough for template matching (SciLifeLab 2023) Created page with "Category:Walkthroughs ''Dynamo'' includes a set of tools for location of particles inside tomograms. The most simple one is ''template matching''. == Template matching =..."
• 07:5307:53, 20 October 2023 diff hist +15,512 N Starters guide (SciLifeLab 2023) Created page with "This tutorial shows how to manually pick particles in a tomogram, extract them, align and classify them. This tutorial is a shortened version of the original Starters_guide..."
• 07:4907:49, 20 October 2023 diff hist +178 SciLifeLab Workshop for Cryo Electron Tomography Processing →Time Schedule
• 07:4307:43, 20 October 2023 diff hist +389 SciLifeLab Workshop for Cryo Electron Tomography Processing →Laptops

19 October 2023

• 14:3214:32, 19 October 2023 diff hist +142 SciLife Lab Workshop for Subtomogram Averaging 2023 →Materials

9 September 2023

• 12:1012:10, 9 September 2023 diff hist −156 Walkthrough on manual marker clicking (EMBO2023) No edit summary
• 12:0612:06, 9 September 2023 diff hist −1 Walkthrough on command line based tilt series alignment (EMBO2023) →Detection settings
• 12:0612:06, 9 September 2023 diff hist +11 Walkthrough on command line based tilt series alignment (EMBO2023) →Detection settings
• 05:4405:44, 9 September 2023 diff hist −23 Walkthrough on manual marker clicking (EMBO2023) →Loading the data
• 05:4205:42, 9 September 2023 diff hist 0 Walkthrough on manual marker clicking (EMBO2023) →Loading the data
• 05:4205:42, 9 September 2023 diff hist −51 Walkthrough on manual marker clicking (EMBO2023) →Loading the data
• 05:4005:40, 9 September 2023 diff hist −145 Walkthrough on manual marker clicking (EMBO2023) →Loading the data

8 September 2023

• 16:3116:31, 8 September 2023 diff hist +18,739 N Walkthrough for lattices on vesicles (EMBO2023) Created page with "This walkthrough shows the approach to process proteins that cover spheroidal vesicles following (approximately) a structured lattice. For demonstration, we use a highly binne..."
• 16:2116:21, 8 September 2023 diff hist +22,285 N Getting a Structure from Multiple Tomograms of HIV Capsids (EMBO2023) Created page with "In this walkthrough you will get familiar with managing multiple tomograms through the ''Dynamo'' catalogue and developing strategies for alignment projects to reach a reasona..."
• 16:1016:10, 8 September 2023 diff hist +8 EMBO workshop 2023 →Schedule
• 14:5814:58, 8 September 2023 diff hist +46,641 N Advanced starters guide (EMBO2023) Created page with "Category:Walkthroughs This walkthrough uses a small size example based on a real tomogram to cover several tasks. == The example data set == The data is a fraction of a..."
• 14:5814:58, 8 September 2023 diff hist 0 EMBO workshop 2023 →Schedule
• 14:5614:56, 8 September 2023 diff hist +15,512 N Starters guide (EMBO2023) Created page with "This tutorial shows how to manually pick particles in a tomogram, extract them, align and classify them. This tutorial is a shortened version of the original Starters_guide..."
• 14:5614:56, 8 September 2023 diff hist 0 EMBO workshop 2023 →Schedule
• 14:5414:54, 8 September 2023 diff hist +19 Walkthrough for template matching/ EMBO2023 →Getting the tomogram
• 14:5414:54, 8 September 2023 diff hist +26,099 N Walkthrough for template matching/ EMBO2023 Created page with "Category:Walkthroughs ''Dynamo'' includes a set of tools for location of particles inside tomograms. The most simple one is ''template matching''. == Template matching =..."
• 14:4714:47, 8 September 2023 diff hist +10 EMBO workshop 2023 →Schedule
• 14:3614:36, 8 September 2023 diff hist −108 Walkthrough on command line based tilt series alignment (EMBO2023) No edit summary
• 14:3414:34, 8 September 2023 diff hist +5,753 N Walkthrough on command line based tilt series alignment (EMBO2023) Created page with "This last tutorial on tilt series alignment is command line based. When we are under a high data regime, it is, perhaps, the most attractive option. = Create the workflow =..."
• 14:2814:28, 8 September 2023 diff hist 0 EMBO workshop 2023 →Schedule
• 14:2814:28, 8 September 2023 diff hist +57 Walkthrough on GUI based tilt series alignment (EMBO2023) No edit summary
• 14:2314:23, 8 September 2023 diff hist +20,959 N Walkthrough on GUI based tilt series alignment (EMBO2023) Created page with "This walkthrough guides users through a series of steps on how to use it in GUI-based mode. = Data = Here we will be using the same data as in the previous tutorial. So, if..."
• 14:1414:14, 8 September 2023 diff hist +15 Walkthrough on manual marker clicking (EMBO2023) →Data set
• 14:0014:00, 8 September 2023 diff hist 0 EMBO workshop 2023 →Schedule
• 13:5713:57, 8 September 2023 diff hist −12 Walkthrough on manual marker clicking (EMBO2023) →Data set
• 13:5413:54, 8 September 2023 diff hist −69 Walkthrough on manual marker clicking (EMBO2023) No edit summary
• 13:4913:49, 8 September 2023 diff hist −2 Walkthrough on manual marker clicking (EMBO2023) No edit summary
• 13:4913:49, 8 September 2023 diff hist +3 Walkthrough on manual marker clicking (EMBO2023) No edit summary