User contributions for Stefano Scaramuzza

26 March 2019

• 17:1917:19, 26 March 2019 diff hist +38 Considerations for tilt series alignment in IMOD No edit summary
• 17:1417:14, 26 March 2019 diff hist 0 File:Imod residuals.jpg Stefano Scaramuzza uploaded a new version of File:Imod residuals.jpg current
• 17:0617:06, 26 March 2019 diff hist 0 N File:Imod residuals.jpg No edit summary
• 17:0617:06, 26 March 2019 diff hist +93 Considerations for tilt series alignment in IMOD No edit summary

11 March 2019

• 14:0314:03, 11 March 2019 diff hist +188 Considerations for tilt series alignment in IMOD No edit summary

26 February 2019

• 13:0113:01, 26 February 2019 diff hist +266 Considerations for tilt series alignment in IMOD →Residual fixing

1 February 2019

• 16:4216:42, 1 February 2019 diff hist +393 Tilt angle convention No edit summary

31 January 2019

• 14:5214:52, 31 January 2019 diff hist +90 Angle of astigmatism convention No edit summary
• 14:4514:45, 31 January 2019 diff hist +154 Considerations for tomogram positioning in IMOD No edit summary
• 14:3414:34, 31 January 2019 diff hist +53 Tomogram quality assessment No edit summary current
• 14:3414:34, 31 January 2019 diff hist +22 Tomogram quality assessment No edit summary
• 14:3014:30, 31 January 2019 diff hist +10 Considerations for tilt series alignment in IMOD No edit summary
• 14:2314:23, 31 January 2019 diff hist +9 Tilt angle convention No edit summary

30 January 2019

• 17:0217:02, 30 January 2019 diff hist 0 Angle of astigmatism convention No edit summary
• 16:5916:59, 30 January 2019 diff hist +1 Angle of astigmatism convention No edit summary
• 16:5916:59, 30 January 2019 diff hist +739 N Angle of astigmatism convention Created page with "The angle of astigmatism as is it is defined in [https://bio3d.colorado.edu/imod/ IMOD] and [https://github.com/turonova/novaCTF/wiki novaCTF] differes from the convention use..."
• 16:5616:56, 30 January 2019 diff hist 0 N File:Astigmatism conventions.jpg No edit summary current
• 16:4416:44, 30 January 2019 diff hist +2,522 N Considerations for tomogram positioning in IMOD Created page with "During tomogram reconstruction in [https://bio3d.colorado.edu/imod/ IMOD] at some point the dimensions of the final tomogram are calculated in the "tomogram positioning" step...."
• 16:2916:29, 30 January 2019 diff hist 0 N File:Tomopitch limits.jpg No edit summary current
• 15:4315:43, 30 January 2019 diff hist 0 N File:Tomogram thickness.jpg No edit summary current
• 15:3115:31, 30 January 2019 diff hist 0 N File:Tomopitch parameters.png No edit summary current
• 15:0415:04, 30 January 2019 diff hist +782 Tomogram quality assessment No edit summary
• 14:5014:50, 30 January 2019 diff hist 0 File:Imod alignment parameters.png Stefano Scaramuzza uploaded a new version of File:Imod alignment parameters.png current
• 14:2414:24, 30 January 2019 diff hist +479 N Tomogram quality assessment Created page with "To visually asses the quality of a final tomogram reconstruction, we recommend to look closely at the gold beads in the volume. A good tilt series alignment and therefore good..."
• 14:2314:23, 30 January 2019 diff hist 0 N File:Gold beads quality.jpg No edit summary current
• 14:1214:12, 30 January 2019 diff hist +201 Considerations for tilt series alignment in IMOD No edit summary
• 14:0914:09, 30 January 2019 diff hist 0 N File:Imod red box.png No edit summary current
• 14:0514:05, 30 January 2019 diff hist 0 Considerations for tilt series alignment in IMOD No edit summary
• 14:0514:05, 30 January 2019 diff hist 0 N File:Imod alignment parameters.png No edit summary
• 13:4813:48, 30 January 2019 diff hist +2,145 N Considerations for tilt series alignment in IMOD Created page with "When doing the tilt series alignment in [https://bio3d.colorado.edu/imod/ IMOD] there are a few things we strongly recommend to follow in order to reach the best possible resu..."
• 13:1913:19, 30 January 2019 diff hist +133 Getting a Structure from Multiple Tomograms of HIV Capsids (walkthrough) No edit summary
• 13:1413:14, 30 January 2019 diff hist +176 Getting a Structure from Multiple Tomograms of HIV Capsids No edit summary
• 10:0610:06, 30 January 2019 diff hist +152 Tilt angle convention No edit summary

29 January 2019

• 15:3415:34, 29 January 2019 diff hist +70 Tilt angle convention No edit summary
• 15:2915:29, 29 January 2019 diff hist +25 Tilt angle convention No edit summary
• 15:2815:28, 29 January 2019 diff hist 0 m Tilt angle convention Stefano Scaramuzza moved page Tilt angle conventions to Tilt angle convention without leaving a redirect
• 15:2615:26, 29 January 2019 diff hist +495 Tilt angle convention No edit summary
• 15:0115:01, 29 January 2019 diff hist 0 N File:Defocus left right.png No edit summary
• 15:0115:01, 29 January 2019 diff hist +1,083 N Tilt angle convention Created page with "By default, Dynamo, [https://bio3d.colorado.edu/imod/ IMOD] and [https://github.com/turonova/novaCTF/wiki novaCTF] all use the same convention for the sign of the tilt angle o..."

8 September 2018

• 08:4808:48, 8 September 2018 diff hist +216 Main Page No edit summary

5 September 2018

• 20:4020:40, 5 September 2018 diff hist −17 Getting a Structure from Multiple Tomograms of HIV Capsids (walkthrough) →Extract subvolumes
• 09:3209:32, 5 September 2018 diff hist −2 Advanced starters guide →Creating a tight mask
• 07:0107:01, 5 September 2018 diff hist +20 EMBO workshop 2018 →Data sets
• 06:5606:56, 5 September 2018 diff hist +82 EMBO workshop 2018 →Instructors

4 September 2018

• 15:4415:44, 4 September 2018 diff hist +330 Getting a Structure from Multiple Tomograms of HIV Capsids (walkthrough) No edit summary
• 15:3515:35, 4 September 2018 diff hist +284 Getting a Structure from Multiple Tomograms of HIV Capsids (walkthrough) No edit summary
• 15:3315:33, 4 September 2018 diff hist 0 N File:VLP ali mask x.png No edit summary current
• 15:1515:15, 4 September 2018 diff hist +221 Getting a Structure from Multiple Tomograms of HIV Capsids (walkthrough) No edit summary
• 15:0715:07, 4 September 2018 diff hist +89 Getting a Structure from Multiple Tomograms of HIV Capsids (walkthrough) No edit summary
• 14:4514:45, 4 September 2018 diff hist 0 File:VLP template.png Stefano Scaramuzza uploaded a new version of File:VLP template.png current