Difference between revisions of "Pasteur workshop 2017"
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== Computer access == | == Computer access == | ||
| + | |||
| + | # Access the ICSB account with your password. | ||
| + | # Create a terminal (right click > Open a terminal) | ||
| + | # In the terminal | ||
| + | ## mkdir tomo | ||
| + | ## cd tomo | ||
=== Starting ''Dynamo''=== | === Starting ''Dynamo''=== | ||
| + | |||
| + | load the access to matlab through: | ||
| + | |||
| + | <tt>module load matlab</tt> | ||
| + | |||
| + | in your terminal. Then, in the Matlab window write: | ||
| + | <run> run /ISB2017/dynamo/dynamo_activate.m | ||
=== Data === | === Data === | ||
| + | The tomogram for the second tutorial is located in the location <tt>/ISB2017/Course_material/July19/crop.rec</tt> | ||
| + | Make a local copy through: | ||
| + | <tt>cp /ISB2017/Course_material/July19/crop.rec . </tt> | ||
== Program== | == Program== | ||
Revision as of 17:41, 18 July 2017
A guide to use Dynamo during the practical session of the Pasteur course INTEGRATIVE STRUCTURAL BIOLOGY - Mechanisms of Living Organisms, in the afternoon session of the 19th of July of 2017.
Computer access
- Access the ICSB account with your password.
- Create a terminal (right click > Open a terminal)
- In the terminal
- mkdir tomo
- cd tomo
Starting Dynamo
load the access to matlab through:
module load matlab
in your terminal. Then, in the Matlab window write:
<run> run /ISB2017/dynamo/dynamo_activate.m
Data
The tomogram for the second tutorial is located in the location /ISB2017/Course_material/July19/crop.rec
Make a local copy through:
cp /ISB2017/Course_material/July19/crop.rec .
Program
- Introduction to tomography and subtomogram averaging
- ~45 minutes of presentation to introduce tomography, subtomogram averaging and Dynamo.
- Getting started
- on screen presentation/hands-on practical. We will follow together the basic hands-on tutorial of Dynamo.
- Advanced getting started.
- After the coffee break at 16:00 participants will follow the advanced introduction on a reduced data set from a real tomogram.
Instructors
- Daniel Castaño-Díez, BioEM Lab, University of Basel
- Paula Pérez-Navarro, C-CINA, University of Basel
- Cynthia Taveneau, Institut Curie, Paris
