Walkthrough model workflow reuse: Difference between revisions
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This walkthrough shows how to reuse the geometric computations performed on a single model onto a larger set of models. | This walkthrough shows how to reuse the geometric computations performed on a single model onto a larger set of models. | ||
We can use a [[Synthetic catalogue with filaments | synthetic tomogram ]] containing different tubular structures. | We can use a [[Synthetic catalogue with filaments | synthetic tomogram ]] containing different tubular structures. In this catalogue, we open the tomogram with <tt>dtmslice</tt>, and then define a filament model following the [[Filament Model#Input stage | usual procedure]], so that we end up with a single model containing a set on <tt>points</tt>. | ||
We will now define a workflow, i.e., a method of converting <tt>points</tt> into <tt>crop_points</tt>. | |||
We open the workflow editor of the active model, and start operating the steps, checking graphically the result of each parameter selection. We create first a backbone, selecting the interval between backbone elements. | |||
[[File:ReuseWorkflowBackboneSelect.png|thumb|center|300px|Creation of the backbone]] | |||
And check how the results looks like. | |||
{|style="margin: 0 auto;" | |||
| [[File:.ReuseWorkflowBackbonePlotOrderpng|thumb|upright|400px|XXXXXXX]] | |||
| [[File:.ReuseWorkflowBackbonePlotOrder|thumb|upright|400px|XXXXXXX]] | |||
|} | |||
We then proceed for the next step: selection of the interval (in pixels) between two consecutive crop points. | |||
Revision as of 04:08, 17 August 2016
This walkthrough shows how to reuse the geometric computations performed on a single model onto a larger set of models.
We can use a synthetic tomogram containing different tubular structures. In this catalogue, we open the tomogram with dtmslice, and then define a filament model following the usual procedure, so that we end up with a single model containing a set on points.
We will now define a workflow, i.e., a method of converting points into crop_points.
We open the workflow editor of the active model, and start operating the steps, checking graphically the result of each parameter selection. We create first a backbone, selecting the interval between backbone elements.

And check how the results looks like.
We then proceed for the next step: selection of the interval (in pixels) between two consecutive crop points.