Difference between revisions of "Walkthrough on GUI based tilt series alignment"
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| Line 11: | Line 11: | ||
= Entering the data = | = Entering the data = | ||
| − | = The alignment | + | === Discarded tilt angles === |
| + | = The areas in the alignment task= | ||
== Detection == | == Detection == | ||
| + | |||
| + | === Visualization matrix === | ||
| + | This step just creates a binned version of the tilt series stack to accelerate visualizations that will be invoked in a later point. | ||
| + | |||
| + | === Detection of gold beads === | ||
== Indexing == | == Indexing == | ||
Revision as of 10:23, 26 August 2019
Dynamo includes a
Contents
Data
Creating a workflow alignment
GUI description
Entering the data
Discarded tilt angles
The areas in the alignment task
Detection
Visualization matrix
This step just creates a binned version of the tilt series stack to accelerate visualizations that will be invoked in a later point.
Detection of gold beads
Indexing
Alignment
Fixed the markers
CTF
In this GUI CTF estimation and correction are delegated to CTFFIND4 and Imod's ctfphaseflip programs respectively.
