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| − | Registration for the ''Dynamo'' workshop 2016 in Basel (Switzerland) is closed.
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| − | The workshop provides hands-on training in all practical aspects of sub-tomogram averaging using our software ''Dynamo'', encompassing all stages of the pipeline: tomogram visualization and archiving, particle picking, averaging, refinement and classification. No previous experience is required. Computing infrastructure is provided in place, and we welcome participants to bring their own data sets to work on them during this three-day course. | + | The workshop took place from the 17th to the 19th of August in the [http://www.biozentrum.unibas.ch Biozentrum] of the University of Basel. |
| − | | + | Practical lectures are hold in the Room U1075, close to the Pharmazentrum entry in Klingelbergstrasse 70. |
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| − | ==Registration==
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| − | Regitration for this event is closed.
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| | [[File:workshop_photo_2016.jpg|thumb|center|600px| Participants of the ''Dynamo'' Workshop 2016]] | | [[File:workshop_photo_2016.jpg|thumb|center|600px| Participants of the ''Dynamo'' Workshop 2016]] |
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| − | You'll be ask to confirm your registration by the payment of a fee of 250 CHF. This fee covers lunch and dinners during the workshop, but not the lodgement. Participants are asked to do their own arrangements for accommodation.
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| − | ==Venue==
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| − | The workshop will take place from the 17th to the 19th of August in the [http://www.biozentrum.unibas.ch Biozentrum] of the University of Basel.
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| − | Practical lectures are hold in the Room U1075, close to the Pharmazentrum entry in Klingelbergstrasse 70.
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| − | Please find [http://{{SERVERNAME}}/w/doc/workshops/2016/Plan_Dynamo_Events.pdf here] a map for the different events:
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| − | * Lunch vouchers are valid in the canteen of the Hospital (close to the Biozentrum)
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| − | * Workshop dinner will take place in the Volkshaus Restaurant (Rebgasse 12)
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| − | * Interested participants can visit the CINA facilitieson Friday afternoon.
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| − | ==Travel and Lodging==
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| − | Please note that the travel and lodging are not covered in the workshop registration fee and participants will have to arrange it by themselves. We recommend the following hostels:
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| − | *BaselBackPack - info@baselbackpack.com
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| − | *Youth Hostel Basel - basel@youthhostel.ch
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| − | ==Computing facilities==
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| − | Participants will be provided with an individual workstation and with a temporary account on a remote supercomputing system.
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| − | If you wish to get used to work with ''Dynamo'' on your own laptop, you are welcome to bring it. Please, take into account the platforms where it is possible to [[Installation|install]] the current versions of the code.
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| − | Also, if you have a access to a supercomputing facility in your home institution, it is a good idea to open there an account beforehand and use it during the course. ''Dynamo'' is specially suited to work on [[GPU]] systems.
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| − | ===Computer access===
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| − | Please [[Computers Basel 2016| find details here]]
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| − | ==Program==
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| − | The current program can be downloaded from [http://{{SERVERNAME}}/w/doc/workshops/2016/Dynamo_programme_2016.pdf here]
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| − | . We will cover:
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| − | * Creation of alignment projects.
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| − | * Creation of classification projects.
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| − | * Use of supercomputing devices.
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| − | * Management of complex tomography projects (''Catalogues'')
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| − | * Particle picking in different geometries: filaments, membranes, vesicles.
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| − | ===Materials: data and walkthroughs ===
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| − | The exact contents can be followed [[Materials Basel 2016 | here ]]
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| − | ==Flash presentations==
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| − | Participants are invited to bring along a short presentation (around 3mins per participant) for the Flash Presentation session on Wednesday. Please send them beforehand or give them to us during the first day, as we need to set them on the same computer.
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| − | The order of presentation is as follows:
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| − | #Maeva Le Guenne
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| − | #Victor Kostyuchenko
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| − | #Jeong MinChung
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| − | #Anbang Dai
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| − | #Peter Kirchweger
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| − | #Gergely Gymesi
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| − | #Celia Deville
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| − | #Aaron Tan
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| − | #Mareike Jordan
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| − | #Oleksiy Kovtun
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| − | #Joseph Beton
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| − | #Natasha Burguess
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| − | #Christina Heroven
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| − | #Desiree Benefield
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| − | #Anastasia Gazi
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| − | #Pradeep Luther
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| − | #Mariano Dellarole
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| − | #Francois Bontems
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| − | #Natalya Leneva
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| − | #Julia Peukes
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| − | #Stephanie Sigmund
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| | ==Organizers== | | ==Organizers== |
The workshop took place from the 17th to the 19th of August in the Biozentrum of the University of Basel.
Practical lectures are hold in the Room U1075, close to the Pharmazentrum entry in Klingelbergstrasse 70.
Participants of the
Dynamo Workshop 2016
Organizers
Daniel Castaño-Díez, BioEM lab, University of Basel, Switzerland.
Mikhail Kudryashev, MPI for Biophysics, Frankfurt.
Henning Stahlberg, C-CINA, University of Basel, Switzerland.
Administration
Karen Bergmann, C-CINA, University of Basel, Switzerland.
Instructors
Daniel Castaño-Díez, BioEM Lab, University of Basel, Switzerland.
Mikhail Kudryashev, MPI for Biophysics, Frankfurt.
Alex Noble, New York Structural Biology Center.
Sai Li, University of Oxford, UK.
Wan Jing, University of Basel, Switzerland.
Biozentrum of the University of Basel.
CSCS the Swiss Center for Scientific Computing.
ARC Supercomputing Center of the University of Oxford.
