Walkthrough basic multireference: Difference between revisions
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Created page with "We first create a tutorial data set. <pre >dtutorial ttest -M 8 -N 8 -p pmulti -multi 1 -tight 1 </pre> The flags <tt>-M 8 -N 8</tt> mean that we want to create a synthetic..." |
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[[Category:Walkthroughs]] | |||
We first create a tutorial data set. | We first create a tutorial data set. | ||
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And then we take a look onto the results. | And then we take a look onto the results. | ||
<pre>ddb pmulti:a:ref=* -m</pre> | <pre>ddb pmulti:a:ref=* -m</pre> | ||
[[File:walkthroughMultireferenceIndependent.png|thumb|center|upright|800px|Result of running a multireference project without swapping]] | |||
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<tt>dcp pmulti</tt> | <tt>dcp pmulti</tt> | ||
We check on the <tt>Swap particles</tt> radiobutton, and run the project again: <tt>check</tt>,<tt>unfold</tt> and <tt>run</tt>. | We check on the <tt>Swap particles</tt> radiobutton, | ||
[[File:walkthroughMultireferenceSwap.png|thumb|center|upright|400px|Selecting the swap particles option in mapview]] | |||
and run the project again: <tt>check</tt>,<tt>unfold</tt> and <tt>run</tt>. | |||
And we check the results: | And we check the results: | ||
{|style="margin: 0 auto;" | |||
| [[File:walkthroughMultireferenceSwapResults.png|thumb|upright|400px| Mapview shows two different averages.]] | |||
| [[File:walkthroughMultireferenceSwapResultsZoom.png|thumb|upright|400px| Zoom. Clicking [C] on a slice centers mapview on it ]] | |||
|} | |||
Latest revision as of 12:53, 2 December 2024
We first create a tutorial data set.
dtutorial ttest -M 8 -N 8 -p pmulti -multi 1 -tight 1
The flags -M 8 -N 8 mean that we want to create a synthetic data set with 8 particles on one class, and 8 particles from a different class.
Then we can just execute it. It will take some minutes.
pmulti
And then we take a look onto the results.
ddb pmulti:a:ref=* -m
(you can get this plot through the dc GUI). Apparently nothing happened. Why? The reason is that what we just ran was a multireference project without particle swapping, i.ie., the particles where aligned separately and were never allowed to "see" each other. So, we tray again, but now we connect the swapping:
dcp pmulti
We check on the Swap particles radiobutton,
and run the project again: check,unfold and run.
And we check the results:
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