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• Volume list file
  Volume list files are text files with extension {{t|.vll}}. They are used as an easy i A volume list file just lists tomogram files, letting the user attach under each line rep
  6 KB (906 words) - 14:24, 10 April 2020

Page text matches

• Dcm GUI
  ...xisting catalogue, the GUI consists in a table that lists each catalogued volume as a row. In general, you need to click on ''list volumes'' to refresh this table area if you change some property of the cat
  2 KB (285 words) - 15:42, 21 March 2016
• Volume list file
  Volume list files are text files with extension {{t|.vll}}. They are used as an easy i A volume list file just lists tomogram files, letting the user attach under each line rep
  6 KB (906 words) - 14:24, 10 April 2020
• Particle extraction
  === Volume table index === The [[volume table index file]] is generated when several tomograms have been used. It i
  7 KB (1,221 words) - 14:46, 24 April 2018
• Dcm
  where {{t|myvll}} is a [[volume list file]], in this case a text file with the names of the files
  626 bytes (93 words) - 12:21, 1 September 2016
• Catalogue
  ...trough the <tt>dcm</tt> command. Type <tt>help dcm</tt> for an exhaustive list. ...button. If these functionalities are invoked through the GUI, however, the list in the GUI will update automatically.
  5 KB (855 words) - 20:28, 14 August 2017
• Importing models
  ...number of assigned models doesn't change, refresh the GUI pressing the {{t|list volumes}} button.
  3 KB (419 words) - 09:51, 12 March 2020
• Cropping table
  === On a single volume === Cropping particles from a single volume is
  5 KB (787 words) - 12:49, 23 May 2018
• Walkthrough model worfklow reuse
  If we open the tomogram with the volume list manager, we will get a list of those models. We should see that the first we created does contain some
  4 KB (574 words) - 04:54, 17 August 2016
• Matlab cell array
  % creates a table for each model in a list of membrane models * <tt>-i * </tt> : visit all (<tt>*</tt>) volume indices (<tt>-i</tt>). This is optional.
  6 KB (1,039 words) - 15:09, 23 February 2017
• Daverage
  * <tt>.tags:</tt> <br /> list of tags that did actually contribute to the averaging procedure. This is Note that the volume <tt>rotatedParticle</tt> will contain some NaN (not-a-number) values, as ex
  5 KB (792 words) - 13:09, 13 October 2017
• Fourier compensation during averaging
  ...e raw average, each missing wedge is rotated and added into a volume. This volume has the size of a particle if Fourier space. It is called an {{t|fweight}} T.B.I. The user can provide a ''generic data folder'' as just a list of tomograms and coordinates. This way, ''Dynamo''will crop on the fly the
  4 KB (582 words) - 10:06, 21 November 2017
• Cropping unbinned particles after having worked with binned particles
  ...which should have been geneerated in the workspace. We use it to create a list with the names of the binned tomograms with some easy string handling; we j To create the new catalogue, we need a text file which just a list of filenames:
  8 KB (1,292 words) - 16:50, 6 February 2020
• Model
  ...model is generated from scratch in the workspace, you need to add it to a volume [[Adding models to catalogued volumes|explicitly]]. : will list all the models in all volumes in the catalogue (as a cell array of files i
  10 KB (1,574 words) - 09:00, 2 May 2017
• Table
  <tt>dapropos table</tt> will give you a list of basic commands that you can use for table manipulation. ...The same table can be used for several volumes when used jointly with a [[volume-table mapping file]].
  8 KB (1,191 words) - 07:50, 1 June 2017
• Starters guide (EMBO2023)
  ...s, you can add tomograms to the catalogue by ''Catalogue -> Browse for new volume''. The tomograms are situated in the directory <tt>testCatalogue</tt>. They Select the first tomogram in the list and go to ''View volume>Full tomogram file in tomoslice''.
  15 KB (2,422 words) - 14:56, 8 September 2023
• Starters guide (EMBO2021)
  ...s, you can add tomograms to the catalogue by ''Catalogue -> Browse for new volume''. The tomograms are situated in the directory <tt>testCatalogue</tt>. They Select the first tomogram in the list and go to ''View volume>Full tomogram file in tomoslice''.
  15 KB (2,422 words) - 14:17, 13 September 2021
• Starters guide (workshop version)
  ...s, you can add tomograms to the catalogue by ''Catalogue -> Browse for new volume''. The tomograms are situated in the directory <tt>testCatalogue</tt>. They Select the first tomogram in the list and go to ''View volume>Full tomogram file in tomoslice''.
  15 KB (2,427 words) - 17:27, 3 September 2021
• Starters guide (Göttingen 2024)
  ...s, you can add tomograms to the catalogue by ''Catalogue -> Browse for new volume''. The tomograms are situated in the directory <tt>testCatalogue</tt>. They Select the first tomogram in the list and go to ''View volume>Full tomogram file in tomoslice''.
  15 KB (2,427 words) - 11:19, 8 April 2024
• Starters guide (Copenhagen 2024)
  ...s, you can add tomograms to the catalogue by ''Catalogue -> Browse for new volume''. The tomograms are situated in the directory <tt>testCatalogue</tt>. They Select the first tomogram in the list and go to ''View volume>Full tomogram file in tomoslice''.
  15 KB (2,427 words) - 12:26, 25 January 2024
• Starters guide (SciLifeLab 2023)
  ...s, you can add tomograms to the catalogue by ''Catalogue -> Browse for new volume''. The tomograms are situated in the directory <tt>testCatalogue</tt>. They Select the first tomogram in the list and go to ''View volume>Full tomogram file in tomoslice''.
  15 KB (2,424 words) - 14:17, 25 October 2023

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