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• Vesicle models
  Vesicle models are appropriate when particles are evenly distributed on surfaces reasonabl === From dipole set models ===
  10 KB (1,585 words) - 09:00, 24 February 2017
• Importing models
  ''Importing models'' refers to the creation of model objects based on coordinates and angles c ...ee that after addition of a model into the tomogram the number of assigned models doesn't change, refresh the GUI pressing the {{t|list volumes}} button.
  3 KB (419 words) - 09:51, 12 March 2020
• Membrane models
  * you want to define precisely and (consequently for all models) the step between two z-levels, or
  5 KB (792 words) - 10:18, 28 February 2017
• Dipole set models
  ...vesicle, and using a single <tt>dipole set</tt> model to encompass all the models). Some manipulation [[Vesicle_models#From_dipole_set_models | from the comm
  7 KB (1,268 words) - 12:58, 2 December 2024
• Linking surfaces into point models
  Linking surfaces with point models is an useful way to get initial orientations of particles. The idea is to a Let's assume you have to models in your workspace: <tt>p</tt> is a general point model, and <tt>s</tt> is a
  2 KB (266 words) - 13:25, 14 July 2017
• Walkthrough on filament models
  ...t subtomograms from filament-like structures using the ''Dynamo'' filament models. ...tomogram entry appears in the catalogue manager. Any further annotations (models) to the tomogram will be linked to this entry. Select the entry and open it
  6 KB (1,044 words) - 12:42, 2 December 2024
• Walkthrough on membrane models
  ...uctures with large surfaces (e.g., membranes) using the ''Dynamo'' surface models. ...tomogram entry appears in the catalogue manager. Any further annotations (models) to the tomogram will be linked to this entry. Select the entry and open it
  7 KB (1,176 words) - 12:43, 2 December 2024
• Walkthrough on vesicle models
  ...extract subtomograms from vesicle-like structures using the Dynamo vesicle models. ...tomogram entry appears in the catalogue manager. Any further annotations (models) to the tomogram will be linked to this entry. Select the entry and open it
  5 KB (856 words) - 12:42, 2 December 2024
• Adding models to catalogued volumes
  {{t| myCatalogue/volume_2/models/someModel.omd}} {{t| dwrite(myModel,'myCatalogue/volume_2/models/myModel.omd')}}.
  3 KB (482 words) - 14:54, 23 February 2017

Page text matches

• Dcm
  ===Adding models from a tomogram===
  626 bytes (93 words) - 12:21, 1 September 2016
• Particle picking
  ...one or models that capture the geometry of the particle distribution. The models will be also kept in the catalogue. ...rite a [[Scripts on sets of models | script]] to visit in one loop all the models and operate on them.
  2 KB (340 words) - 11:31, 23 February 2017
• Model pool
  The ''model pool'' is the set of models currently hold on MEMORY (and not necessarily on the hard disk). From all the models in the model pool, at any given time only one (or none) is consedered to be
  1 KB (244 words) - 11:27, 22 March 2016
• Video tutorials
  === Models ===
  1 KB (226 words) - 08:24, 1 June 2016
• Importing models
  ''Importing models'' refers to the creation of model objects based on coordinates and angles c ...ee that after addition of a model into the tomogram the number of assigned models doesn't change, refresh the GUI pressing the {{t|list volumes}} button.
  3 KB (419 words) - 09:51, 12 March 2020
• Walkthrough model workflow reuse
  ...he geometric computations performed on a single model onto a larger set of models. | [[File:modelReuseFilament3Points.png|thumb|upright|400px|three filament models ]]
  4 KB (597 words) - 09:29, 4 March 2025
• Oblique slices in tomoslice
  ...include any models visible in the field of view of the rotation frame. The models in the [[model pool]] can be accessed with the same menus also available in [[File:ObliqueViewAuxiliaryModel.png|thumb|center|600px| The models seen in the [[model pool]] of <tt>dtmslice</tt> are also visible here/]]
  3 KB (425 words) - 13:01, 2 December 2024
• Model
  [[Category:Models]] #: Models are naturally integrated inside the [[catalogue]] system, making the proces
  10 KB (1,574 words) - 09:00, 2 May 2017
• Linking surfaces into point models
  Linking surfaces with point models is an useful way to get initial orientations of particles. The idea is to a Let's assume you have to models in your workspace: <tt>p</tt> is a general point model, and <tt>s</tt> is a
  2 KB (266 words) - 13:25, 14 July 2017
• Volume list file
  ...are used as an easy interface to describe sets of tomograms and attached models. #<nowiki>!</nowiki> Import models from this source
  6 KB (906 words) - 14:24, 10 April 2020
• Adding models to catalogued volumes
  {{t| myCatalogue/volume_2/models/someModel.omd}} {{t| dwrite(myModel,'myCatalogue/volume_2/models/myModel.omd')}}.
  3 KB (482 words) - 14:54, 23 February 2017
• Matlab cell array
  === Loops on models === ...ing [[membrane models]], you frequently use a given series of [[membrane models#Command line| commands]].
  6 KB (1,039 words) - 15:09, 23 February 2017
• Getting started
  ===Core module of ''Dynamo'': models and STA=== ...models]], [[Walkthrough on vesicle models]] and [[Walkthrough on membrane models]]. These walkthroughs introduce how sample architecture can be encoded and
  7 KB (963 words) - 15:21, 4 December 2024
• Workshop exercises
  === Command line manipulation of sets of models === ...the approach of saving a ''Model workflow'' and reuse it later on a set of models defined inside the ''Catalogue'' manager <tt>dcm</tt>. This technique may p
  4 KB (700 words) - 13:46, 2 December 2024
• Montage viewer for membrane picking
  ...y spherical. If they depart too much from sphericity, you can use membrane models, as done in this walkthrough. == Addition of further models==
  5 KB (874 words) - 12:45, 2 December 2024
• Catalogue
  === Relinking models === ...dcm</tt> with flag <tt> synchronize </tt> tuned to the literal value <tt> models </tt>, i.e.
  5 KB (855 words) - 20:28, 14 August 2017
• Dynamo catalogue tutorial
  ...allows you to create a catalogue with some small tomograms and predefined models so that you can play with it before using the catalogue on your own data se
  642 bytes (98 words) - 14:10, 27 April 2016
• Dtmslice
  ...ogue, and to a particular volume inside the catalogue. This means that the models that are imported, edited and/or saved will be automatically submitted to t ...e as an auxiliary image that is also interactive, allowing the creation of models or the navegation in the tomogram.
  10 KB (1,696 words) - 13:59, 27 November 2020
• Seed oversampling
  [[Category:Models]] ...d, as membranes or pseudo crystals. The {{t|crop_points}} generated by the models after the geometric computation stage are not supposed to realistically be
  4 KB (683 words) - 11:51, 3 February 2017
• Cropping table
  === From models === Generating tables is the very reason models exist. If you want to generate the table corresponding to a single model {{
  5 KB (787 words) - 12:49, 23 May 2018

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