Table - Revision history

Daniel Castaño: /* Basic plots through GUI */

2017-06-01T07:50:31Z

Basic plots through GUI

2017-06-01T07:50:06Z

Plots through command line

2017-02-20T14:13:49Z

Low level manipulation

2017-02-20T14:12:43Z

Table manipulation

2017-02-20T14:09:48Z

Merging tables

2017-02-20T14:08:51Z

Merging tables

2017-02-20T14:08:06Z

Merging tables

2017-02-20T14:07:54Z

Merging tables

2017-02-20T14:07:35Z

Merging tables

2017-02-20T14:03:49Z

Table manipulation

@@ Line 117: / Line 117: @@
 <tt>dtshow(myTable)</tt>
-for a talbe defined in the workspace, opens a lightweight GUI that allows quick plotting of the contents of the table, and also a GUI access to all the plotting options of  <tt>dtplot</tt>. This GUI is one of options that the [[dcp GUI]] offers when exploring the results of an alignment through browsing the generated tables.
+for a table defined in the workspace, opens a lightweight GUI that allows quick plotting of the contents of the table, and also a GUI access to all the plotting options of  <tt>dtplot</tt>. This GUI is one of options that the [[dcp GUI]] offers when exploring the results of an alignment through browsing the generated tables.
 === GUI for complex plots <tt>dtview</tt> ===

@@ Line 98: / Line 98: @@
 {{docfunction|dynamo_tableplot|dtplot}} allows the creation of graphs like: positions of particles in a volume, orientations, distributions of orientations.
 For instace, you can check if all the particles in a reference (column = 34) have a similar missing wedge orientation (the tilt angle is coded in column 8).
 === Basic plots through GUI===

@@ Line 134: / Line 134: @@
 dwrite(tMerged,<merged table file>);</nowiki>
-When you merge tables manually, please make sure than the merged tables do '''not''' have overlapping tags.
+When you merge tables manually, please make sure than the merged tables do '''not''' have overlapping tags (column 1).
 ==== Merging commands  ====

@@ Line 123: / Line 123: @@
 === Selection of parts of a table ===
 Use <tt>dtgrep</tt>. It's applicability ranges from just selecting an explicitely defined range of particle tags to the computation of particles pointing in a direction.
 === Merging tables ===
 ==== Low level manipulation ====
-Tables are simply matrices. As such, they can be easily merged with simple Matlab manipulation. For instance, to merge the tables in files <tt>table file 1</tt> and <tt>table file 2</tt> and set the result into file  <tt>merged table file</tt>, you just read the contents into the workspace and use the <tt>cat</tt> commnad for matrix concatenation:
+Tables are just matrices. As such, they can be easily merged with simple Matlab manipulation tools. For instance, to merge the tables in files <tt>table file 1</tt> and <tt>table file 2</tt> and set the result into file  <tt>merged table file</tt>, you just read the contents into the workspace and use the <tt>cat</tt> commnad for matrix concatenation:
   <nowiki>t1 = dread(<table file 1>);
@@ Line 135: / Line 133: @@
 tMerged = cat(1,t1,t2); % concatenate rows of t1 and t2
 dwrite(tMerged,<merged table file>);</nowiki>
 ==== Merging commands  ====

@@ Line 134: / Line 134: @@
 t2 = dread(<table file 2>);
 tMerged = cat(1,t1,t2); % concatenate rows of t1 and t2
-dwrite(tMerged,merged table file);</nowiki>
+dwrite(tMerged,<merged table file>);</nowiki>
 ==== Merging commands  ====

@@ Line 129: / Line 129: @@
 ==== Low level manipulation ====
-Tables are simply matrices. As such, they can be easily merged with simple Matlab manipulation. For instance, to merge the tables in files <tt>table file 1</tt> and <tt>table file 2</tt> and set the result into file  <tt>merged table file</tt>, you just read the contents into the workspace and use the <tt>cat</tt> commnad for matrix concatenation
+Tables are simply matrices. As such, they can be easily merged with simple Matlab manipulation. For instance, to merge the tables in files <tt>table file 1</tt> and <tt>table file 2</tt> and set the result into file  <tt>merged table file</tt>, you just read the contents into the workspace and use the <tt>cat</tt> commnad for matrix concatenation:
   <nowiki>t1 = dread(<table file 1>);
@@ Line 137: / Line 137: @@
 ==== Merging commands  ====
-''Dynamo'' also includes a <tt>dynamo_table_merge</tt> command.
+''Dynamo'' also includes a <tt>dynamo_table_merge</tt> command, available from Matalb or the [[standalone]]
 === Conversion tools for other software packages ===
 <tt>dapropos compatibility</tt> will print a selection of functions that can be used to import and export particle metadata with the format expected by other packages, as AV3, jsubtomo and XMIPP