Refined table - Revision history

Daniel Castaño: /* Sanity checks with the refined tables */

2016-04-22T09:15:08Z

Sanity checks with the refined tables

Daniel Castaño: /* Checking the aligned particles */

2016-04-22T09:10:43Z

Checking the aligned particles

Daniel Castaño: Created page with " The ''refined table'' is the result of the alignment iteration. ''Dynamo'' produces one refined table per iteration and reference. It follows the ''Dynamo'' Table conventi..."

2016-04-22T09:10:22Z

Created page with " The ''refined table'' is the result of the alignment iteration. ''Dynamo'' produces one refined table per iteration and reference. It follows the ''Dynamo'' Table conventi..."

New page

The ''refined table'' is the result of the alignment iteration. ''Dynamo'' produces one refined table per iteration and reference.

It follows the ''Dynamo'' [[Table convention|convention]] for tables. In particular, ''Dynamo'' should fill some columns in a ''refined table'' during alignment:
* columns 3 (marks if the particle was actually used for the average produced at the iteration)
* columns 4-9 (the alignment parameters)
* column 10 10 (the cross correlation coefficient computed for the alignment particle)
* column 34: In [[Multireference alignment|multireference projects]], the reference number that the particle has been assigned to.

==Accessing the refined table ==
The {{t|ddb}} command provides easy access to the results of the project. Here some examples of syntax

Display the name of the last computed table (by default, from reference 1)
<tt>ddb myProjet:t -d</tt>

Display the name of the tables computed for all iterations at one given reference:
<tt>ddb myProjet:t:ite=*:ref=2 -d</tt>

Read the refined table of iteration 3 into workspace variable {{t|myTable}}
<tt>ddb myProjet:t:ite=1 -d</tt>

==Sanity checks with the refined tables==
It is useful to check how an alignment is going.

===Checking the aligned particles===
<tt>ddbrowse -p myProject </tt>
will open {{t|ddbrowse}} onto the data and the last available refined table of project {{t|myPoject}}

{{docfunction|dynamo_databrowse|ddbrowse}}

===Checking the orientations===
Use {{t|dtplot}} with the {{t|oriented_positions}} option as {{t|profile}}
{{docfunction|dynamo_tableplot|dtplot}}

@@ Line 21: / Line 21: @@
 ==Sanity checks with the refined tables==
-It is useful to check how an alignment is going.
 ===Checking the aligned particles===
 <tt>ddbrowse -p myProject </tt>
 will open {{t|ddbrowse}} onto the data and the last available refined table of project {{t|myPoject}}
@@ Line 30: / Line 34: @@
 ===Checking the orientations===
 Use {{t|dtplot}} with the {{t|oriented_positions}} option as {{t|profile}}
 {{docfunction|dynamo_tableplot|dtplot}}