Oblique slices in tomoslice - Revision history

Raffaele Coray at 13:01, 2 December 2024

2024-12-02T13:01:15Z

Daniel Castaño at 15:23, 27 April 2017

2017-04-27T15:23:45Z

Daniel Castaño at 15:20, 27 April 2017

2017-04-27T15:20:43Z

Daniel Castaño at 15:04, 27 April 2017

2017-04-27T15:04:20Z

Daniel Castaño at 15:01, 27 April 2017

2017-04-27T15:01:48Z

Daniel Castaño at 14:55, 27 April 2017

2017-04-27T14:55:54Z

Daniel Castaño: Created page with "This is a walkthrough on the use of the ''rotation frames'' inside the tomogram browser dtmslice Slice walkthrough 1 Fi..."

2017-04-27T14:42:33Z

Created page with "This is a walkthrough on the use of the ''rotation frames'' inside the tomogram browser dtmslice thumb|right|400px| Slice walkthrough 1 Fi..."

New page

← Older revision		Revision as of 13:01, 2 December 2024
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		+	[[Category:Walkthroughs]]
		+
	This is a walkthrough on the use of the ''rotation frames'' inside the tomogram browser [[dtmslice]]		This is a walkthrough on the use of the ''rotation frames'' inside the tomogram browser [[dtmslice]]

@@ Line 6: / Line 6: @@
 The square point at the end of the normal is interactive and can be used to rotate and drag the frame:
 [[File:ObliqueViewRotator.png|thumb|center|400px| Interactive rotation frame created with key '''f''' ]]
-# Rotation: move the mouse while keeping the main mouse button pressed.
+* Rotation: move the mouse while keeping the main mouse button pressed.
-# Shift:  move the mouse while keeping    the main button '''and''' the [shift] key pressed.
+* Shift:  move the mouse while keeping    the main button '''and''' the [shift] key pressed.
-# Secondary click on the square control point: opens a menu of options.
+* Menu of further options: Secondary click on the square control point.
-[[File:ObliqueViewOptions.png|thumb|center|600px| Secondary click on the control point opens an options menu.  ]]
+:-Alignment of axes in orthogonal orientations
 A further GUI will appear: the ''oblique view GUI'' associated to the rotating frame.
@@ Line 15: / Line 17: @@
 The size of the GUI corresponds to the length of the frame. This can be changed in tomoslice by dragging any side with the mouse.
-# No key pressed:  moves only the clicked segment
+* No key pressed:  moves only the clicked segment
-# [Shift] pressed:   keeps the frame segment lengths to proportion 1:1
+* [Shift] pressed:   keeps the frame segment lengths to proportion 1:1
-# [Shift] + [control] pressed: elongates the frame in a given direction (moves simultaneously horizontal or vertical segments)
+* [Shift] + [control] pressed: elongates the frame in a given direction (moves simultaneously horizontal or vertical segments)
 [[File:ObliqueViewAuxiliaryResized.png|thumb|center|600px| Resizing the frame in tmslice resizes the auxiliary oblique view GUI]]
 In the oblique view GUI you can select contrast setting, bandpass (in Nyqusit frecuency) and number of projectd slices.

@@ Line 6: / Line 6: @@
 The square point at the end of the normal is interactive and can be used to rotate and drag the frame:
 [[File:ObliqueViewRotator.png|thumb|center|400px| Interactive rotation frame created with key '''f''' ]]
-Rotation: move the mouse while keeping the main mouse button pressed.
+# Rotation: move the mouse while keeping the main mouse button pressed.
-Shift:  move the mouse while keeping    the main button '''and''' the [shift] key pressed.
+# Shift:  move the mouse while keeping    the main button '''and''' the [shift] key pressed.
-Secondary click on the square control point: opens a menu of options.
+# Secondary click on the square control point: opens a menu of options.
 [[File:ObliqueViewOptions.png|thumb|center|600px| Secondary click on the control point opens an options menu.  ]]
@@ Line 15: / Line 15: @@
 The size of the GUI corresponds to the length of the frame. This can be changed in tomoslice by dragging any side with the mouse.
-No key pressed:  moves only the clicked segment
+# No key pressed:  moves only the clicked segment
-Shift pressed:   keeps the frame segment lengths to proportion 1:1
+# [Shift] pressed:   keeps the frame segment lengths to proportion 1:1
-shift + control pressed: elongates the frame in a given direction (moves simultaneously horizontal or vertical segments)
+# [Shift] + [control] pressed: elongates the frame in a given direction (moves simultaneously horizontal or vertical segments)
 [[File:ObliqueViewAuxiliaryResized.png|thumb|center|600px| Resizing the frame in tmslice resizes the auxiliary oblique view GUI]]
 In the oblique view GUI you can select contrast setting, bandpass (in Nyqusit frecuency) and number of projectd slices.

@@ Line 12: / Line 12: @@
 A further GUI will appear: the ''oblique view GUI'' associated to the rotating frame.
-[[File:ObliqueViewAuxiliary.png|thumb|center|600px| The oblique view GUI ]]
+[[File:ObliqueViewAuxiliary.png|thumb|center|500px| The oblique view GUI ]]
 The size of the GUI corresponds to the length of the frame. This can be changed in tomoslice by dragging any side with the mouse.

@@ Line 5: / Line 5: @@
 The square point at the end of the normal is interactive and can be used to rotate and drag the frame:
-[[File:ObliqueViewRotator.png|thumb|right|400px| Interactive rotation frame created with key '''f''' ]]
+[[File:ObliqueViewRotator.png|thumb|center|400px| Interactive rotation frame created with key '''f''' ]]
 Rotation: move the mouse while keeping the main mouse button pressed.
 Shift:  move the mouse while keeping    the main button '''and''' the [shift] key pressed.
 Secondary click on the square control point: opens a menu of options.
-[[File:ObliqueViewOptions.png|thumb|center|400px| Secondary click on the control point opens an options menu.  ]]
+[[File:ObliqueViewOptions.png|thumb|center|600px| Secondary click on the control point opens an options menu.  ]]
 A further GUI will appear: the ''oblique view GUI'' associated to the rotating frame.
-[[File:ObliqueViewAuxiliary.png|thumb|center|400px| The oblique view GUI ]]
+[[File:ObliqueViewAuxiliary.png|thumb|center|600px| The oblique view GUI ]]
 The size of the GUI corresponds to the length of the frame. This can be changed in tomoslice by dragging any side with the mouse.
@@ Line 18: / Line 18: @@
 Shift pressed:   keeps the frame segment lengths to proportion 1:1
 shift + control pressed: elongates the frame in a given direction (moves simultaneously horizontal or vertical segments)
-[[File:ObliqueViewAuxiliaryResized.png|thumb|center|400px| Resizing the frame in tmslice resizes the auxiliary oblique view GUI]]
+[[File:ObliqueViewAuxiliaryResized.png|thumb|center|600px| Resizing the frame in tmslice resizes the auxiliary oblique view GUI]]
+In the oblique view GUI you can select contrast setting, bandpass (in Nyqusit frecuency) and number of projectd slices.
-[[File:ObliqueViewAuxiliaryBandpassed.png|thumb|center|400px| Modifying the bandpass parameters, amount of projected slices or contrast settings makes the structure of interest visible]]
+[[File:ObliqueViewAuxiliaryBandpassed.png|thumb|center|600px| Modifying the bandpass parameters, amount of projected slices or contrast settings makes the structure of interest visible]]
 [[File:ObliqueViewAuxiliaryModel.png|thumb|center|600px| The models seen in the [[model pool]] of <tt>dtmslice</tt>  are also visible here/]]
 [[File:ObliqueViewModelSynchronized.png|thumb|center|600px| Model points hit on the oblique view GUI appaear in the corresponding position of the main scene  ]]

@@ Line 1: / Line 1: @@
 This is a walkthrough on the use of the ''rotation frames'' inside the tomogram browser [[dtmslice]]
-[[File:ObliqueViewPick.png|thumb|right|400px| Slice walkthrough 1 ]]
+The rotation frame can be created selecting a spot with the mouse in the main scene and pressing on the key '''k'''
-[[File:ObliqueViewRotator.png|thumb|right|400px| Slice walkthrough 1 ]]
+[[File:ObliqueViewPick.png|center|right|400px| Selection of spot ]]
-[[File:ObliqueViewOptions.png|thumb|right|400px| Slice walkthrough 1 ]]
-[[File:ObliqueViewAuxiliary.png|thumb|right|400px| Slice walkthrough 1 ]]
+The square point at the end of the normal is interactive and can be used to rotate and drag the frame:
-[[File:ObliqueViewAuxiliaryResized.png|thumb|right|400px| Slice walkthrough 1 ]]
+[[File:ObliqueViewRotator.png|thumb|right|400px| Interactive rotation frame created with key '''f''' ]]
-[[File:ObliqueViewAuxiliaryBandpassed.png|thumb|right|400px| Slice walkthrough 1 ]]
+Rotation: move the mouse while keeping the main mouse button pressed.
-[[File:ObliqueViewAuxiliaryModel.png|thumb|right|400px| Slice walkthrough 1 ]]
+Shift:  move the mouse while keeping    the main button '''and''' the [shift] key pressed.
-[[File:ObliqueViewModelSynchronized.png|thumb|right|400px| Slice walkthrough 1 ]]
+Secondary click on the square control point: opens a menu of options.