Importing models - Revision history

Daniel Castaño: /* Manual creation */

2020-03-12T09:51:05Z

Manual creation

2019-09-27T08:37:20Z

From the command line

2016-04-27T16:29:00Z

With the GUI

2016-04-27T11:07:30Z

Import with {{t|dmiport}}

2016-04-27T11:06:45Z

2016-04-27T11:06:24Z

2016-04-27T11:03:35Z

2016-04-27T11:01:03Z

Manual creation

2016-04-27T09:46:06Z

Manual creation

2016-04-27T09:45:40Z

Manual creation

@@ Line 35: / Line 35: @@
   m.addPoint(r); % the matrix of points gets added into model m
 </tt>
 When you are finished adding points, you close the model with {{t|updateCrop}}:

← Older revision		Revision as of 08:37, 27 September 2019
Line 43:		Line 43:

	to ensure that {{t\|crop_points}} have been generated, and thus ''Dynamo'' will be able to produce a non-empty table when the model is invoked on a later stage.		to ensure that {{t\|crop_points}} have been generated, and thus ''Dynamo'' will be able to produce a non-empty table when the model is invoked on a later stage.
		+
		+	=== Including the model into the catalog ===
		+
		+	Remember that you need to [[Adding_models_to_catalogued_volumes\| link and save a model into the catalogue]] if you want to access it later through the catalogue.

@@ Line 4: / Line 4: @@
 ==With the GUI==
-When importing models with the GUIs of the catalogue, the resulting models get automatically assigned to a catalogued volume.
+When importing models with the GUIs of the catalogue, the resulting models get automatically assigned to a catalogued volume. The number of models assigned to a volume in the catalogue is one of the columns in the row corresponding to that tomogram in the [[dcm GUI]]. If you see that after addition of a model into the tomogram the number of assigned models doesn't change, refresh the GUI pressing the {{t|list volumes}} button.
 == From the command line==

@@ Line 17: / Line 17: @@
 Different options are
 #{{t|'xyz'}} for inputs formatted as columns of coordinates.
-#{{t,|'table'}} if the input is a ''Dynamo'' table
+#{{t|'table'}} if the input is a ''Dynamo'' table
 #{{t|'motl'}} for AV3 motl files or variables.
 #{{t|'star'}} for star files defined inside jsubtomo.

@@ Line 32: / Line 32: @@
 <tt>
   r = dread(someFile.txt);
-<nowiki>#<nowiki> now r sould be a matrix with three columns defined in workspace
+<nowiki>#</nowiki> now r sould be a matrix with three columns defined in workspace
   m.addPoint(r); % the matrix of points gets added into model m
 </tt>

@@ Line 8: / Line 8: @@
 == From the command line==
-=== dynamo_model_import===
+=== Import with {{t|dmiport}} ===
 The basic command is {{t|dynamo_model_import}}.
 <tt>
 m = dmimport(myFormat,mySource);
 </tt>
-Here,{{t|mySource}} can be different objects or files that contain coordinates or angles. You specify the format of the source with {{t|myFormat}}.
+Here, {{t|mySource}} can be different objects or files that contain coordinates or angles. You specify the format of the source with {{t|myFormat}}.
 Different options are
 #{{t|'xyz'}} for inputs formatted as columns of coordinates.
 #{{t,|'table'}} if the input is a ''Dynamo'' table
 #{{t|'motl'}} for AV3 motl files or variables.
+=== Manual creation ===
 Alternatively, you can generate a model from scratch and then fill it with coordinates and angles. In this case, you would write: