EMBO workshop 2021 - Revision history

Raffaele Coray at 13:24, 2 December 2024

2024-12-02T13:24:34Z

2021-09-11T16:07:29Z

2021-09-11T16:07:02Z

2021-09-11T16:06:37Z

2021-09-11T15:09:09Z

ending Monday's session at 18h00 to make it match with the official programme

2021-09-10T12:32:08Z

Schedule

2021-09-10T12:31:47Z

2021-09-07T16:25:22Z

Data location

2021-09-07T16:25:09Z

Data location

2021-09-07T15:59:20Z

Load and run Dynamo

← Older revision		Revision as of 13:24, 2 December 2024
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		+	[[Category:WalkthroughsSpecific]]
		+
	The tutorials listed here take place virtually on the 11th and 13th of September of 2021 (14:00-18:30, London time) as part of the EMBO workshop for Image processing in cryoEM.		The tutorials listed here take place virtually on the 11th and 13th of September of 2021 (14:00-18:30, London time) as part of the EMBO workshop for Image processing in cryoEM.

@@ Line 121: / Line 121: @@
+|
 |-
-| Optional:
+| Optional: 18:00
 | Tutorial
 | [[Walkthrough for template matching | Template matching]]

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+|
 |-
-| Optional:
+| Optional: 18:00
 | Tutorials
 | [[Getting_a_Structure_from_Multiple_Tomograms_of_HIV_Capsids_(walkthrough) | Virus like particles]] or [[Walkthrough for lattices on vesicles| Spherical geometries]]
+|
 |}

@@ Line 111: / Line 111: @@
+|
 |-
-| 17:00 - 17:45
+| 17:00 - 17:30
 | Tutorial
 | [[Walkthrough_on_filament_models | Models for filaments]]
+|
 |-
-| 17:45 - 18:30
+| 17:30 - 18:00
 | Tutorial
 | [[Walkthrough_on_membrane_models | Models for surfaces]]

@@ Line 148: / Line 148: @@
+|
 |-
-| 15:45 - 18:15
+| 15:45 - 17:45
 | Tutorial
 | [[Advanced_starters_guide_(EMBO2021) | Advanced starters guide]]
 | Take a 15 min break individually during this tutorial
 |-
-| 18:15 - 18:30
+| 17:45 - 18:00
 | Presentation
 | Closing remarks

@@ Line 128: / Line 128: @@
 ! colspan="4" | '''Day 2'''
 |-
-|'''Time'''
+|'''Time (London)'''
 |'''Activity
 |'''Topic'''

@@ Line 1: / Line 1: @@
-The tutorials listed here take place virtually on the 11th and 13th of September of 2021 (14:00-18:30) as part of the EMBO workshop for Image processing in cryoEM.
+The tutorials listed here take place virtually on the 11th and 13th of September of 2021 (14:00-18:30, London time) as part of the EMBO workshop for Image processing in cryoEM.
 =Connect to Guacamole and run Dynamo=
@@ Line 81: / Line 81: @@
 ! colspan="4" | '''Day 1'''
 |-
-|'''Time'''
+|'''Time (London)'''
 |'''Activity
 |'''Topic'''

@@ Line 46: / Line 46: @@
 [[File:embo_files.png|thumb|center|500px|files]]
-During the ''Dynamo'' workshop, work '''only''' within those two directories.
+During the ''Dynamo'' workshop, work '''only''' within these two directories.
 === Load and run Dynamo ===

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 '''Note:''' Copy paste of commands from your local desktop into the dynamo standalone console on the remote Linux XFCe desktop might not always work. We suggest to additionally open the tutorials that you will be working on in a browser inside the remote Linux XFCe desktop itself, in case you need to copy paste long commands.
-'''Note:''' We suggest to open a new tab in the terminal (''File -> Open Tab''), in which to navigate to the same directory. You can then use this tab for normal linux commands so you do not have to quit ''Dynamo'' every time you want to do something else (e.g., running alignment projects or using chimera). Be aware that if you press ctrl+c within the ''Dynamo'' console you exit ''Dynamo'' and lose your workspace.
+'''Note:''' We suggest to open a new tab in the terminal (''File -> Open Tab''), in which you navigate to the same directory. You can then use this tab for normal linux commands so you do not have to quit ''Dynamo'' every time you want to do something else (e.g., running alignment projects or using chimera). Be aware that if you press ctrl+c within the ''Dynamo'' console you exit ''Dynamo'' and lose your workspace.
 === Chimera ===