EMBO workshop 2016 - Revision history

Raffaele Coray at 13:17, 2 December 2024

2024-12-02T13:17:40Z

2016-08-31T15:51:13Z

Data sets

2016-08-31T12:46:46Z

Data management and modeling

2016-08-30T09:09:53Z

2016-08-30T09:07:37Z

General Introduction

2016-08-30T09:07:19Z

General Introduction

2016-08-29T17:47:47Z

2016-08-29T17:47:00Z

2016-08-29T07:20:00Z

Data sets

2016-08-24T15:00:50Z

Computing resources

← Older revision		Revision as of 13:17, 2 December 2024
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		+	[[Category:WalkthroughsSpecific]]
		+
	''Dynamo'' will be used for the subtomogram averaging part of the EMBO course on Image Processing for CryoEM data.		''Dynamo'' will be used for the subtomogram averaging part of the EMBO course on Image Processing for CryoEM data.

@@ Line 8: / Line 8: @@
 == Data sets ==
-In the directory <tt>/g/teachinglab/data/DYNAMO</tt> there are folders with real data sets representing typical situations. There are both tomograms and already extracted [[data folder]]s.
+In the directory <tt>/g/embo2016/data/DYNAMO</tt> there are folders with real data sets representing typical situations. There are both tomograms and already extracted [[data folder]]s.
 *T1 to T4 are tomograms described [http://{{SERVERNAME}}/w/doc/workshops/2016/Datasets.pdf here].
 *P1-P2 are folders containing different formatted data folders.

@@ Line 38: / Line 38: @@
 Wednesday 31 August (first part).
-*  [http://{{SERVERNAME}}/w/doc/misc/modelMembrane tutorial on] membrane modeling with <tt> dmslice </tt>
+*  [http://{{SERVERNAME}}/w/doc/misc/modelMembrane.pdf tutorial on] membrane modeling with <tt> dmslice </tt>
 * Filament models with <tt>dtmslice</tt>
-** [http://{{SERVERNAME}}/w/doc/misc/modelFilament tutorial ]
+** [http://{{SERVERNAME}}/w/doc/misc/modelFilament.pdf tutorial ]
 ** [[Filament model | walkthrough]]
 * Reusing model workflows ([[Walkthrough model worfklow reuse | walkthrough]])

@@ Line 7: / Line 7: @@
 * [[GPUs EMBO 2016 |Remote GPUs]]
-== Teaching materials==
+== Data sets ==
 In the directory <tt>/g/teachinglab/data/DYNAMO</tt> there are folders with real data sets representing typical situations. There are both tomograms and already extracted [[data folder]]s.
 *T1 to T4 are tomograms described [http://{{SERVERNAME}}/w/doc/workshops/2016/Datasets.pdf here].
@@ Line 14: / Line 13: @@
 An additional data set of [http://www.sciencedirect.com/science/article/pii/S0969212615004931 5ht3] particles is available through [https://drive.google.com/open?id=0BwunkvGgI_EpUnlqSF9EVXVwVVk this Google drive link]. This data sets includes several thousands of particles. If you want to work with the whole data set, it is a good idea to download it directly into your CSCS account.
 ===General Introduction===
 Tuesday 30 August 2016.

@@ Line 33: / Line 33: @@
 after the second coffee break
-* Introduction to the use of  [[GPUs EMBO 2016 | remotely lcoated GPUs]]
+* Introduction to the use of  [[GPUs EMBO 2016 | remotely located GPUs]]
 ===Data management and modeling===

@@ Line 30: / Line 30: @@
 ** {{pdftutorial|commandline|tutorial}} on the use command line operations for general purposes.
 ** {{pdftutorial|command_line_projects|tutorial}} on the use of the command line to manage projects.
 ===Data management and modeling===

@@ Line 1: / Line 1: @@
 ''Dynamo'' will be used for the subtomogram averaging part of the EMBO course on Image Processing for CryoEM data.
-This page will guide you through
+==Computers==
 We will be using two different computing resources:
@@ Line 17: / Line 14: @@
 An additional data set of [http://www.sciencedirect.com/science/article/pii/S0969212615004931 5ht3] particles is available through [https://drive.google.com/open?id=0BwunkvGgI_EpUnlqSF9EVXVwVVk this Google drive link]. This data sets includes several thousands of particles. If you want to work with the whole data set, it is a good idea to download it directly into your CSCS account.
 ===General Introduction===

← Older revision		Revision as of 07:20, 29 August 2016
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	== Data sets ==		== Data sets ==
		+	== Data sets ==
		+	In the directory <tt>/g/teachinglab/data/DYNAMO</tt> there are folders with real data sets representing typical situations. There are both tomograms and already extracted [[data folder]]s.
		+	*T1 to T4 are tomograms described [http://{{SERVERNAME}}/w/doc/workshops/2016/Datasets.pdf here].
		+	*P1-P2 are folders containing different formatted data folders.
		+
		+	An additional data set of [http://www.sciencedirect.com/science/article/pii/S0969212615004931 5ht3] particles is available through [https://drive.google.com/open?id=0BwunkvGgI_EpUnlqSF9EVXVwVVk this Google drive link]. This data sets includes several thousands of particles. If you want to work with the whole data set, it is a good idea to download it directly into your CSCS account.

	== Teaching materials==		== Teaching materials==

@@ Line 5: / Line 5: @@
 == Computing resources ==
-We will be using two different computing resources.
+We will be using two different computing resources:
-* Local workstations
+* [[Workstations EMBO 2016| Local Linux workstations]]
-* Remote GPUs
+* [[GPUs EMBO 2016 |Remote GPUs]]
 == Data sets ==