Daniel Castaño at 15:42, 21 March 2016

2016-03-21T15:42:10Z

Daniel Castaño: Created page with "Category:Catalogues The `dcm` GUI provides an interactive way to manage existing catalogues. More management tools are available through the [[dcm|`dcm`]..."

2016-03-21T15:37:04Z

Created page with "Category:Catalogues The <tt>dcm</tt> GUI provides an interactive way to manage existing catalogues. More management tools are available through the [[dcm|<tt>dcm</tt>]..."

New page

[[Category:Catalogues]]
The <tt>dcm</tt> GUI provides an interactive way to manage existing [[catalogues]]. More management tools are available through the [[dcm|<tt>dcm</tt>]] command.

The GUI will apper in invoked with

<code>
>>dcm
</code>

or

<code>
>>dcm catalogueName
</code>

to open it directly on an existing catalogue.

Once opened on an existing catalogue, the GUI consists in a table that lists each catalogued volume as a row.
In general, you need to click on ''list volumes'' to refresh this table area if you change some property of the catalogue externally.

==Creating a catalogue==
Type in the name intended for the catalogue, and then click ''Catalogue>create new catalogue''. The newly created catalogue will be empty.

==Adding tomograms into a catalogue==
Tomograms can be inserted with ''Catalogue > type in/browse a new volume'', to include volumes one by one, or use ''Catalogue >volume list'' to add several files registered in a [[volume list file]]

== Binning tomograms ==
Click on ''Catalogue'' and then on ''Create binned versions'' in order to [[Viewing tomograms#Prebinned tomograms| prebin]] at once you whole set of tomograms

== Tomogram annotation==
Select one tomogram and then click on ''View of selected volume''. This will give you a selection of options. If you are not certain about the size of the tomogram and how it will fit in memory, the best thing to do is to open it with the on-the-fly option, that will open the volume on [[dpreview]]

==Particle cropping==
To crop particles after all volumes have been annotated, select a group of volumes and use the ''Crop Particles'' menu tab and the ''Open Volume List Manager"

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	The <tt>dcm</tt> GUI provides an interactive way to manage existing [[catalogues]]. More management tools are available through the [[dcm\|<tt>dcm</tt>]] command.		The <tt>dcm</tt> GUI provides an interactive way to manage existing [[catalogues]]. More management tools are available through the [[dcm\|<tt>dcm</tt>]] command.

Dcm GUI - Revision history

Daniel Castaño at 15:42, 21 March 2016

Daniel Castaño: Created page with "Category:Catalogues The dcm GUI provides an interactive way to manage existing catalogues. More management tools are available through the [[dcm|dcm]..."

Daniel Castaño: Created page with "Category:Catalogues The `dcm` GUI provides an interactive way to manage existing catalogues. More management tools are available through the [[dcm|`dcm`]..."