Stefano Scaramuzza at 13:56, 27 August 2018

2018-08-27T13:56:57Z

Daniel Castaño: /* WLAN connection */

2018-08-27T07:07:14Z

WLAN connection

Daniel Castaño at 07:07, 27 August 2018

2018-08-27T07:07:01Z

Daniel Castaño: Created page with "== WLAN connection == The credentials are: unibas-event User : dynamo Password : dynamo2018 == Biozentrum == Use the credentials from your credentia..."

2018-08-26T17:53:29Z

Created page with "== WLAN connection == The credentials are: <nowiki>unibas-event User : dynamo Password : dynamo2018</nowiki> == Biozentrum == Use the credentials from your credentia..."

New page

== WLAN connection ==

The credentials are:
<nowiki>unibas-event
User : dynamo
Password : dynamo2018</nowiki>

== Biozentrum ==

Use the credentials from your credential handout to log into the Linux workstations.

=== Opening a terminal===

Auxiliary click on the Ubuntu screen and choose the <tt>Open terminal</tt> option.

=== Checking the ''Dynamo'' installation ===

''Dynamo'' should be already installed in your local directory <tt>~/dynamo</tt>. Check in with:

<tt>ls ~/dynamo</tt>

You should see something like this:

<nowiki>C
MCRforMac
MacOS
README_dynamo_installation.txt
cuda
ddemos
doc
dynamo_activate.m
dynamo_activate_linux.sh
dynamo_activate_linux_shipped_MCR.sh
dynamo_activate_mac.sh
dynamo_activate_mac.sh~
dynamo_activate_mac_shipped_MCR.sh
dynamo_activate_windows.bat
dynamo_compile_mpi.sh
dynamo_setup_cluster.sh
dynamo_setup_linux.sh
dynamo_setup_mac.sh
examples
licenses
matlab
mex
mpi</nowiki>

====Installing ''Dynamo''====

'''If''' ''Dynamo'' is not installed: ''''To install ''Dynamo'' locally, just open a Linux terminal ('''not''' a matlab terminal ) and write:

<tt>/clab-share/installDynamo.sh</tt>

It should take around a minute.

=== Opening Matlab ===

We will be using the Matlab release R2017a. To open it, type in the shell:

<tt>/usr/local/matlab/R2017a/bin/matlab &</tt>

===Opening ''Dynamo'' in Matlab===

After opening a Matlab session, you'll need to activate ''Dynamo'' in that session. ''Dynamo '' should be installed locally in <tt>~/dynamo</tt>.
In order to activate your local ''Dynamo'' version, please type in the Matlab shell:

<tt>run ~/dynamo/dynamo_activate.m</tt>

As a fallback, we have a centrally installed version in <tt>/clab-share/dynamo</tt>

===Opening ''Dynamo'' as standalone ===

If you want to use '''Dynamo''' from a Linux terminal:

<tt>source ~/dynamo/dynamo_activate_linux_shipped_MCR.sh</tt>

To follow the workshop, we recommend to use the Matlab version.

==== Activate Chimera UCSF====
If you want to use Chimera UCSF during a ''Dynamo'' session inside Matlab, you need to tell ''Dynamo'' where Chimera is:

<tt>run /clab-share/activateChimera.m</tt>

← Older revision		Revision as of 13:56, 27 August 2018
Line 80:		Line 80:
	If you want to use Chimera UCSF during a ''Dynamo'' session inside Matlab, you need to tell ''Dynamo'' where Chimera is:		If you want to use Chimera UCSF during a ''Dynamo'' session inside Matlab, you need to tell ''Dynamo'' where Chimera is:

−	<tt>run /~~clab-share~~/activateChimera.m</tt>	+	<tt>run ~/data/activateChimera.m</tt>

@@ Line 3: / Line 3: @@
 The credentials are:
   <nowiki>unibas-event
-User         :  dynamo-2018
+User :  dynamo-2018
 Password : Biozentrum$8</nowiki>

Computers Basel 2018 - Revision history

Stefano Scaramuzza at 13:56, 27 August 2018

Daniel Castaño: /* WLAN connection */

Daniel Castaño at 07:07, 27 August 2018

Daniel Castaño: Created page with "== WLAN connection == The credentials are: unibas-event User : dynamo Password : dynamo2018 == Biozentrum == Use the credentials from your credentia..."