Computers Basel 2017 - Revision history

Daniel Castaño: /* Using Dynamo */

2017-08-25T10:23:38Z

Using Dynamo

2017-08-24T14:27:03Z

Connecting

2017-08-24T14:26:31Z

2017-08-24T14:25:52Z

Using Dynamo

2017-08-24T14:25:17Z

Using Dynamo

2017-08-24T14:23:51Z

Using Dynamo

2017-08-24T14:20:56Z

Using Dynamo

2017-08-24T14:19:36Z

Using Dynamo

2017-08-24T14:17:36Z

Using Dynamo

2017-08-23T12:11:46Z

WLAN connection

@@ Line 101: / Line 101: @@
 # Create alignment project >> computational parameters >> system_gpu
 # Dynamo Wizard >> Tools >> Create tarball
 # <tt>scp <project.tar> course##@ela.cscs.ch:~/ </tt>
 # <tt>ssh -Y course##@ela.cscs.ch >> mkdir data/ </tt>

@@ Line 89: / Line 89: @@
 === Connecting===
 First you need to connect to the gate node <tt>ela</tt> using your cscs credentials from the credentials handout.
-<pre>ssh -Y stud01@ela.cscs.ch</pre>
+<pre>ssh -Y course01@ela.cscs.ch</pre>
 and then you can connect to the computing machine called <tt>daint</tt>, again you will be requested to type in your credentials.

@@ Line 140: / Line 140: @@
 * when it finishes, the averages can be also accessed programmatically with the database tool. For instance, to access the last computed average and view it with <tt>dview</tt>, type:
 : <tt> ddb ptest:a -v</tt>
 '''Note about performance'''
@@ Line 146: / Line 145: @@
 We are using an old ''Dynamo'' version. Modern ''Dynamo'' versions don't access the MCR library several times.

@@ Line 124: / Line 124: @@
 # <tt>salloc -C gpu</tt>
 # <tt>srun <project.exe></tt>
 === ''Dynamo'' as standalone ===

@@ Line 101: / Line 101: @@
 # Create alignment project >> computational parameters >> system_gpu
 # Dynamo Wizard >> Tools >> Create tarball
-# scp <project.tar> course##@ela.cscs.ch:~/
+# <tt>scp <project.tar> course##@ela.cscs.ch:~/ </tt>
-# ssh -Y course##@ela.cscs.ch >> mkdir data/
+# <tt>ssh -Y course##@ela.cscs.ch >> mkdir data/ </tt>
-# scp <your data folder> course##@ela.cscs.ch:~/data/
+# <tt>scp <your data folder> course##@ela.cscs.ch:~/data/ </tt>
 ;On CSCS:

@@ Line 106: / Line 106: @@
 ;On CSCS:
-# source /users/course42/bin/dynamoFlorida/dynamo_activate_linux_shipped_MCR.sh
+# <tt>source /users/course42/bin/dynamoFlorida/dynamo_activate_linux_shipped_MCR.sh </tt>
-# dynamo x
+# <tt>dynamo x </tt>
 #Untar your ''Dynamo'' project
-# dvuntar <project.tar>
+# <tt>dvuntar <project.tar> </tt>
-# dcp <project>
+# <tt>dcp <project> </tt>
 # Check >> Unfold
-# (on ela): ssh -Y daint
+#: ''Note''
-# source /users/course42/bin/dynamoFlorida/dynamo_activate_linux_shipped_MCR.sh
+#: if the graphical interface is too slow, you can use the command line instead:
-# salloc -C gpu
+#: open a ''Dynamo'' console in your shell with <tt>dynamo x</tt>
-# srun <project.exe>
+#: <tt>dvput my_project -destination system_gpu</tt>
+#: <tt>dvunfold my_project</tt>
 ;On the local machine

@@ Line 95: / Line 95: @@
 === Using ''Dynamo''===
 ;On the local machine
-. Create alignment project >> computational parameters >> system_gpu
+# Create alignment project >> computational parameters >> system_gpu
-. Dynamo Wizard >> Tools >> Create tarball
+# Dynamo Wizard >> Tools >> Create tarball
-. scp <project.tar> course##@ela.cscs.ch:~/
+# scp <project.tar> course##@ela.cscs.ch:~/
-. ssh -Y course##@ela.cscs.ch >> mkdir data/
+# ssh -Y course##@ela.cscs.ch >> mkdir data/
-. scp <your data folder> course##@ela.cscs.ch:~/data/
+# scp <your data folder> course##@ela.cscs.ch:~/data/
 ;On CSCS,
-. source /users/course42/bin/dynamoFlorida/dynamo_activate_linux_shipped_MCR.sh
+# source /users/course42/bin/dynamoFlorida/dynamo_activate_linux_shipped_MCR.sh
-. dynamo x
+# dynamo x
-. dvuntar <project.tar>
+#Untar your ''Dynamo'' project
-. dcp <project>
+# dvuntar <project.tar>
-. Make sure everything is correctly located.
+# dcp <project>
-. Check >> Unfold
+# Make sure everything is correctly located.
-. (on ela): ssh -Y daint
+# Check >> Unfold
-. source /users/course42/bin/dynamoFlorida/dynamo_activate_linux_shipped_MCR.sh
+# (on ela): ssh -Y daint
-. salloc -C gpu
+# source /users/course42/bin/dynamoFlorida/dynamo_activate_linux_shipped_MCR.sh
-. srun <project.exe>
+# salloc -C gpu
+# srun <project.exe>
 ;On the local machine
 #tar your project in'' Dynamo'' (in <tt>Dynamo wizard >> Tools >> Create a tarball</tt>

@@ Line 3: / Line 3: @@
 The credentials are:
   <nowiki>unibas-event
-User    :  eventbzpz
+User     :  eventbzpz
-Password: DynamoWS17!</nowiki>
+Password : DynamoWS17!</nowiki>
 == Biozentrum ==