Complete walkthrough on FHV virus (SciLifeLab 2023) - Revision history

Raffaele Coray at 12:39, 2 December 2024

2024-12-02T12:39:02Z

AlmaVivas: /* Subboxing project */

2023-10-20T11:53:49Z

Subboxing project

AlmaVivas: /* Project to find membrane orientations */

2023-10-20T08:37:07Z

Project to find membrane orientations

AlmaVivas: /* Project to find membrane orientations */

2023-10-20T08:34:59Z

Project to find membrane orientations

AlmaVivas: /* Project to find membrane orientations */

2023-10-20T08:34:33Z

Project to find membrane orientations

AlmaVivas: /* Project to find membrane orientations */

2023-10-20T08:34:31Z

Project to find membrane orientations

AlmaVivas: /* Project to find membrane orientations */

2023-10-20T08:29:22Z

Project to find membrane orientations

AlmaVivas: /* Project to find membrane orientations */

2023-10-20T08:28:50Z

Project to find membrane orientations

AlmaVivas: Created page with "Category:Walkthroughs This walkthrough uses a small size example based on a real tomogram to cover several tasks. == The example data set == The data is a fraction of a..."

2023-10-20T08:16:15Z

Created page with "Category:Walkthroughs This walkthrough uses a small size example based on a real tomogram to cover several tasks. == The example data set == The data is a fraction of a..."

Show changes

← Older revision		Revision as of 12:39, 2 December 2024
Line 1:		Line 1:
−	[[Category:~~Walkthroughs~~]]	+	[[Category:WalkthroughsSpecific]]

	This walkthrough uses a small size example based on a real tomogram to cover several tasks.		This walkthrough uses a small size example based on a real tomogram to cover several tasks.

@@ Line 765: / Line 765: @@
 A list of the names of the parameters can be displayed through the command <tt>dvhelp</tt>. The computing environment is set using the <tt>destination</tt> parameter, shortnamed <tt>dst</tt>. To run it in matlab use:
-  <tt> dvput -dst matlab_parfor</tt>
+  <tt> dvput -dst matlab</tt>
 For standalone running, use:

← Older revision		Revision as of 08:37, 20 October 2023
Line 249:		Line 249:

	<tt>first</tt>		<tt>first</tt>
−
−	~~If you are running ''Dynamo'' in standalone modus, open a new tab (or window) of the terminal, load Dynamo (but don't run Dynamo) and type:~~
−
−	~~<tt>./first.exe</tt>~~

	After running the project, we check the created average:		After running the project, we check the created average:

@@ Line 236: / Line 236: @@
 Also, remember to visit the window for execution environment, and select the appropriate settings. If you are working with Matlab, select ''Matlab''(for one single core) or "Matlab_parfor" (if you are going to several cores. Be aware that it requires the parallel computing toolbox.). If working with the standalone, use the [[standalone]]  option.  In both cases, select the number of cores for alignment (green box in the picture below) and averaging (blue box) .
-  [[File:fhv_environment.png|thumb|center|500px| Selecting the execution modus]]
+  [[File:fhv_computing_enviroment.png|thumb|center|500px| Selecting the execution modus]]
 You can operate the project management operations from the GUI or the command line. First checking:

@@ Line 236: / Line 236: @@
 Also, remember to visit the window for execution environment, and select the appropriate settings. If you are working with Matlab, select ''Matlab''(for one single core) or "Matlab_parfor" (if you are going to several cores. Be aware that it requires the parallel computing toolbox.). If working with the standalone, use the [[standalone]]  option.  In both cases, select the number of cores for alignment (green box in the picture below) and averaging (blue box) .
-  [[File:fhv_computing_enviroment.png|thumb|center|500px| Selecting the execution mode.]]
+  [[File:fhv_environment.png|thumb|center|500px| Selecting the execution modus]]
 You can operate the project management operations from the GUI or the command line. First checking:

@@ Line 234: / Line 234: @@
   [[File:FhvFirstParameters.png|thumb|center|500px| Numerical parameters for just membrane orientation]]
-Also, remember to visit the window for execution environment, and select the appropriate settings. If you are working with Matlab, select ''Matlab''(for one single core) or "Matlab_parfor" (if you are going to several cores. Be aware that it requeres the parallel computing toolbox.). If working with the standalone, use the [[standalone]]  option.  In both cases, select the number of cores for alignment (green box in the picture below) and averaging (blue box) .
+Also, remember to visit the window for execution environment, and select the appropriate settings. If you are working with Matlab, select ''Matlab''(for one single core) or "Matlab_parfor" (if you are going to several cores. Be aware that it requires the parallel computing toolbox.). If working with the standalone, use the [[standalone]]  option.  In both cases, select the number of cores for alignment (green box in the picture below) and averaging (blue box) .
   [[File:fhv_environment.png|thumb|center|500px| Selecting the execution modus]]