Activation of Chimera UCSF - Revision history

Daniel Castaño: /* In the standalone version */

2017-09-18T17:59:52Z

In the standalone version

Daniel Castaño at 10:17, 2 May 2017

2017-05-02T10:17:07Z

Daniel Castaño at 10:12, 2 May 2017

2017-05-02T10:12:54Z

Daniel Castaño at 10:12, 2 May 2017

2017-05-02T10:12:09Z

Daniel Castaño at 10:10, 2 May 2017

2017-05-02T10:10:30Z

Daniel Castaño at 15:38, 27 April 2017

2017-04-27T15:38:26Z

Daniel Castaño at 15:37, 27 April 2017

2017-04-27T15:37:57Z

Daniel Castaño: Created page with "Several tools in ''Dynamo'' include a link to send maps into Chimera UCSF. In order for these tools to be functional, ''Dynamo'' needs to know the location of Chimera. For th..."

2017-04-27T15:37:42Z

Created page with "Several tools in ''Dynamo'' include a link to send maps into Chimera UCSF. In order for these tools to be functional, ''Dynamo'' needs to know the location of Chimera. For th..."

New page

Several tools in ''Dynamo'' include a link to send maps into Chimera UCSF. In order for these tools to be functional, ''Dynamo'' needs to know the location of Chimera.

For this, you need to write
<tt> dynamo_chimera -path <my PATH> </tt>

inside your Matlab session, or in the [[console]] if you are using the standalone version. <tt>myPath</tt> should be the absolute path to your Chimera executable.

If ''Dynamo'' finds the executable at that location, a synthetic thermosome image will open.

← Older revision		Revision as of 17:59, 18 September 2017
Line 13:		Line 13:

	Alternatively, you can add the path to Chimera in a running session with the notation		Alternatively, you can add the path to Chimera in a running session with the notation
−	<tt>mbsys.io.addPath('myAbsoluteChimeraPath'); </tt>	+	<tt>mbsys.os.addPath('myAbsoluteChimeraPath'); </tt>

@@ Line 9: / Line 9: @@
 == In the standalone version==
-If you are using the [[standalone]] version, you need to set the path to Chimera  '''before''' initiating the ''Dynamo'' session in your Linux shell, for instance:
+If you are using the [[standalone]] version, you canset the path to Chimera  before initiating the ''Dynamo'' session in your Linux shell, for instance:
   <tt> export PATH=$PATH:myChimeraPath </tt>

@@ Line 1: / Line 1: @@
 Several tools in ''Dynamo'' include a link to send maps into Chimera UCSF. In order for these tools to be functional, ''Dynamo'' needs to know the location of Chimera.
 For this, you need to write
   <tt> dynamo_chimera -path myChimeraPath </tt>
-inside your Matlab session.  Here <tt>myChimeraPath</tt> should be the absolute path to your Chimera executable.
+inside your Matlab session.  Here <tt>myChimeraPath</tt> should be the absolute path to your Chimera executable. If ''Dynamo'' finds the executable at that location, a synthetic thermosome image will open.
 If you are using the [[standalone]] version, you need to set the path to Chimera  '''before''' initiating the ''Dynamo'' session in your Linux shell, for instance:
   <tt> export PATH=$PATH:myChimeraPath </tt>

@@ Line 2: / Line 2: @@
 For this, you need to write
-<tt> dynamo_chimera -path myChimeraPath </tt>
+ <tt> dynamo_chimera -path myChimeraPath </tt>
 inside your Matlab session.  Here <tt>myChimeraPath</tt> should be the absolute path to your Chimera executable.
-If you are using the [[standalone]] version, you need to set the path to Chimera  '''before''' initiating the ''Dynamo'' session in your Linux shell.
+If you are using the [[standalone]] version, you need to set the path to Chimera  '''before''' initiating the ''Dynamo'' session in your Linux shell, for instance:
 If ''Dynamo'' finds the executable at that location, a synthetic thermosome image will open.

@@ Line 4: / Line 4: @@
 <tt> dynamo_chimera -path myChimeraPath </tt>
-inside your Matlab session, or in the [[Dynamo console]] if you are using the [[standalone]] version.  Here <tt>myChimeraPath</tt> should be the absolute path to your Chimera executable.
+inside your Matlab session.  Here <tt>myChimeraPath</tt> should be the absolute path to your Chimera executable.
 If ''Dynamo'' finds the executable at that location, a synthetic thermosome image will open.

@@ Line 4: / Line 4: @@
 <tt> dynamo_chimera -path <my PATH> </tt>
-inside your Matlab session, or in the [[console]] if you are using the standalone version. <tt>myPath</tt> should be the absolute path to your Chimera executable.
+inside your Matlab session, or in the [[Dynamo console]] if you are using the [[standalone]] version. <tt>myPath</tt> should be the absolute path to your Chimera executable.
 If ''Dynamo'' finds the executable at that location, a synthetic thermosome image will open.